LOC118965279 (LOC106595049)


Basic Information

Item Value
gene id LOC118965279
gene name LOC106595049
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28975483 ~ 28977613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983136.1
AGGCGACGCTGccagtgtgacgtataatctagtggacggttcTTCAGAAACAGCTGGTCAACCACCTCGGTAGCTGGCTAGCCAACATAGCCGAAAGATTCAAGCTATTTACACGCTTTCGGTGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCGTATCTACTTGTTAACCTATTTAATTTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcattagcctagtcgctaatgctaactaaCATCCCCGAACATGAGCACCCTAAACTACTCTCCTCCTgttaaagaagaggaggtctgctggacggagaaagaagctctggggctgaacattgtcgtgaaagaggagaaggaagaggaggatgttacagttaaACAAGAAGTAGAAggtgaggctgttacagtgaaagaagaaggggaggatgtctcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtgaaagaagaggatgCAGTTTTTgaagtgggaggagaggagacaggagagagatgtgaccatcgtggatcctctggggagcctcaacaacatcatgatgctgacgaggcagagaagagtctctccagatcagaacacctcaagaaacaccaTCAGAGACCCACAGGAAGGAAacctcactgctgctctgactgtgggaaacaTTGCAAATCTTCATCAAAACTAAAAATACACCAGcgagtacacacaggagagaagccttatagctgtgatcagtgtggcaAGAGTTTTACTCAATCAAGTAGCCTGGTATCacacaagagaacacacacaggagagaagccttatagctgtgatcagtgtggcaAGAGTTTTACTCAATCAAGTAGCCtggtatcacaccagagaacacacacaggagagcagCCATATAGCTGTGATCATTGTGGCAAGGGTTTTACTCTGTCAACCAACCtggtatcacaccagagaatacacacaggacatCAGCCATATAGCTGTGATGTATGTGCAGATAGTTTTACTACGTCAAGCCAGCTGGTAGTACACCAGcgagtacacacaggagagaaaccttatagctgtaatcagtgtgggaagagttttactcagtcaaaCAGCCTgaaatcacaccagagaacacacacgggagagaaaccttatagctgtgatcaatgtgacaaAAGATACTCTCATTCAAGTAGTCTgattaaacatcagaaaatacatgcaGGAGATCCACAGAGTGTGGAATGATCtgcaacaccagacctgggtagtagaacacagagtgtgGAATGACCTCCAACAACAgattgatacagttgaagtcggaggtttacatacaccttagccaaatacatttaaactcagtgtttcacaattcctgacatttaatcatagtaaaaattacctgtcttaggtcagttaggat

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983136.1 True 1461 mRNA 0.44 2 28975483 28977613

Neighbor

gene id symbol gene type direction distance location
LOC110527622 LOC106564406 coding upstream 54086 28912640 ~ 28921397 (+)
LOC110527611 rbm45 coding upstream 195298 28754476 ~ 28780185 (+)
mtx2 mtx2 coding upstream 288690 28666416 ~ 28686793 (+)
LOC110527602 LOC105007064 coding upstream 607453 28306267 ~ 28368030 (+)
LOC118965275 LOC106575153 coding upstream 717041 28221625 ~ 28258442 (+)
LOC118965280 NA coding downstream 9733 28987346 ~ 28992237 (+)
LOC110527630 NA coding downstream 33365 29010978 ~ 29013251 (+)
LOC110527620 NA coding downstream 48718 29026331 ~ 29035347 (+)
LOC110527621 NA coding downstream 109498 29087111 ~ 29099411 (+)
LOC110527619 LOC106578599 coding downstream 351971 29329584 ~ 29503787 (+)
G593228 NA non-coding upstream 20612 28954088 ~ 28954871 (+)
G593170 LOC107661334 non-coding upstream 83412 28891822 ~ 28892071 (+)
G593163 NA non-coding upstream 98434 28876643 ~ 28877049 (+)
G593160 NA non-coding upstream 100446 28874696 ~ 28875037 (+)
G593158 NA non-coding upstream 103330 28871909 ~ 28872153 (+)
G593188 NA non-coding downstream 2288 28979901 ~ 28980194 (+)
G593260 LOC106593246 non-coding downstream 42047 29019660 ~ 29024943 (+)
G593274 NA non-coding downstream 66832 29044445 ~ 29059575 (+)
G593291 NA non-coding downstream 102978 29080591 ~ 29080798 (+)
G593171 NA other upstream 83058 28892163 ~ 28892425 (+)
G593144 NA other upstream 134400 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1101062 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1268189 27703583 ~ 27707294 (+)
G592134 NA other upstream 1491687 27483050 ~ 27483796 (+)
G593283 NA other downstream 82085 29059698 ~ 29064592 (+)
G593513 LOC106610831 other downstream 550414 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 1054346 30031959 ~ 30032621 (+)
G596168 NA other downstream 1925566 30903179 ~ 30903887 (+)

Expression


Co-expression Network