LOC118965280


Basic Information

Item Value
gene id LOC118965280
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 28987346 ~ 28992237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052564.1
taatcatatgcatatactatattcctggcatgagtagcaggacgttgaaatgttgcgcgatttttaacaaaatgttgaaaaaattcAAGAGAGCCACACTGTGTTGTTACACtggtgagtaaaaactcatgcTTCCTACCCTTTAACTTGTTGTCTGAAGATAAAATATCAATTTTACTCAACTGTGTCCAGTCAGCAGATGGACTAGATGCCGCTTAGGCCGCCAGTTGTGACTCCTTCAAGAATTCAGCAGagcaagtttgtatgaaggtctggttattAAATGGGTTCATAGTTCAATTTCCTCTAAAACTATCTATTGACAAACTTTGCTGCCCTGTTTCCAGTTGTCCACATGGCTGGGATAACCTCttcaagtaagtaaatacattttgaaaatgtaaaaaaaaatctgtattattagctaactagctacagtgcaggctaactcaaatgagctgctaaaTGAGCTATCTAACCAACTTCACATTCTGTatagatagatagctagctaagtgaATTAAATATCACCATCAACCTAGCTTCATATTAGCCATCTTGTATTTATcactgtaaaaaaacaaactCCAAATGTAGGTAGCTAACAGCCATGGAGGGTGAAAGGATAGCAGCCAGTGAGAGAGGAGGTTATTCTGGAAAGGGCAGGAACTTTTGTGTTGTTCCTGTCCCTAGAAGTGAGGATGGAGATAATACTAACGTAATATTCAGTGTGGTGTAATTTGACTACAATGAAGTCTGTTTCTTGTgaggttttctgtcctcagataaagAGCTCTATGAAAGCCAGTCTACATACAGTATGAAGAGGTCCCAATGAACAGCAGTGGTCCTCAGTCCTGGGGACTCAAGAggggcacatttttgtttttgccttcaaactgcacagctgattcaaatgatcaactcatcatcaaggtTCAAGTGGTATTTCTGTATTAATTTGTGATACCATCCTTGATATGATCATGTTATTGTCACATGCTACACATGCACATATGTGTGCCCATGCATCTATCAATCCAATGTTATCATGATTTGTTATCAGGGAGATTATACTTTAGGAGTCCACAATGAACTGGTGATGTAAAAGTCTAATAATTACATTGTCTTCCATATTCCTACAGATACCTTGTAACTGGAGATTCCTTCAAAACGATTGCCTACGGTTACCAGGTAGGGCACTGGAAGGTTGGGTGACCATGGTCATCTGGGACTGCCTCCTGGAGGAATTCAGGTGTGTGAaggctacctgtgtcctgcgtaacttcatgaggatggacatAAGGACCAGGAGGGGATCTGCTGCTCGCCGCCGTGTGCCAGAGGAGAAGTCTAACAACGCAGCAAGAGAGGCAATCCGGGTGCATGAGATCTTCACCTCCTACTTCTTCAACGagggtgctgttccctggcaacaccatagactacactatgcacaaccaaagtctcttttaagagccattcacattgcaataagagtattcttccatttacttagctatgtcaactgcagttattCCATTCCCAGTTTCTCTCCCTTTGATTTCTACTTCTCAGGTGAGGGTGCTGTTTAGGTAAGGGTGTGATGTCTGTGCAAAAAACAATACAGACTATTTTAAATTACTAATATTGAAAAAATTTAGAACAATTAGACACCCTATaacccacacctacacactcatgtatcaatctgattgatggattgtgttgtgcagtaagcaggttcaggtgtataactgtggctccttccaccttcaaagAATATGCAAGAGgtccaaccatggagaatagtaagacacttCATTATTGCTATAACTTTGTGTTAAGTGAATTTCATTCctgtgttcattaaccaattcaatttaaatcctctgtctgtttctaagaatttgtaaggttcttattaaaatgaaacagacagagatCAGTCTACTTAGTAAGTAGCGTTTACTCTCGTGAGCTCTGCTgtgcacacacaaaaacattcCTCTTATAAAATTTTAACCTAtgaacatacatacacaccaacatagGGATTTTCTCATGAGTCTCACCACAGTTTATCACCACTCAGCTGACAGTTCCAGTCTCCCCCAGATACGAGAGCTCTGGAGGGGCTCTCCCTGTCCTATCTTATCTCTCCAGAGTTACAGCCAGGTCAGTTCAAACAGGTTATTGctactctctgctctctttctacCCCCACATACATTCCTTACTTCCTAGTTCCATGCTATATAACCCCTTCCTAATGAACAAACATTATTTAACACTactagaaagacagggtagaattATTGCCAGTTATAGTTCTGTATACATTATTTAGTcataattcataaaaaaatcccacAACACTATGCTATATTGTTTGTCCTTGTGTGTTTacatgtttttcagcataaactactctgcagccacttagtgtggtgtggacaccaggttatatcagctgtgtcggtGAACCCCTCCTGCAGCTGAACAGGCTAcatagagggcacagcatgatcagatGTGAGAGGTCATTTGGTCAGGTCAACAGGAAGtgttattaaagagatgctttacattgaaatacagatagatgcagtagtcccagagttaatgatccaaggtcagtttatattatacaggaagtattattaaagagatactttacatttaaatacagatagatgcagtagtcccagagttaatggaAGTTGGAagttgtcacggctgttgaaggaagtggaccaaggtgcagcattgTGAGTGAGCATGTTCTTTTATTATAAAACCACCAGaggtgtggactccggccgcaaaacctgaacctataggggagggtctgggtgggcatttatCCGCGGTGGCTGCTAAgggacgcagaccccgctccaccactggctcaccccactttggaggcacctctggtgcggggaccctcgtCGCCGAGTCCGGACTTGGGACCCTcgtagcgggccccggactgggcaccgtcgctgcgggccccggactgggcactgTCGCTGCGGACCctggactggagaccgtcgctggaggccgtcgctggaggctccggactggaggccatCATTgtaggcttcgtgccatgactcctcaAAGGAGGATTCGTGCATGAATCATCACTGGAGGATcggtgccatggatcatcactggaggcttcgtgccatggatcatcactggaggcttcgtgccatggatcatcactggaggctttttgccatggatcatcactggagtggagagacacacaggaggcctggctctgggagcaggcacaggactcaccaggctggggagacatacaggaggcttaGTTCTTGGCAGAGGCactggatacactgggccgtggaggcgcactggtggtctcgagcgcagagctggcacaacccgttcTGGCTCGAGGCCCActtccacccggcaaatgcgggacgTTGGCACAGAGCACACTGGCCTGTGAATGCTCAAccgagacaccgtgcgcatcaccccatagcacggtgcctgaccagtcacatattcgccacggtaagcatggggagttggTTCAGGTCTGAATCCTGATTCTGGCACACTCCCCATGTGTCTCCCTCCCAAAAATCTTTGGGGCTGCCTTTCGGGCTTCCTTTGTAGCCGTTTTCCTTCATAACGCTGACGCTCTGCTTTAGCTGCTGCCTTCGCCTTCCTCTCTGCATCTACCTTCTCCCAGGGCAGGCGATCCTtcccagccaggatctcctcccacgtccaggatcccttGCCATTCAAAATGTTCTCCCACGTCCAttcctccttaccacgctgcttggtccatttgtggtgggaagttctgtcatggctgttgaaggaagtggaccaaggtgctgCGTGGTGAGCGTGAATTGTCTTTTATTATAAAAAAttacgccaacaaaacaagaaaacaattgagtaaagccgccattgttcctcccgctgttatggaaaaagctacacactcggttgatatattatcgaatatatattttaaaaactaccttAAGATTGATTATAAagaacgtttgacatgtttctgtggacattatagatattatttggaatatacatCTGCGTTATGGTGACCGCTCTTtcttgtggatttctgaacataatgcgacAAACAAACgttggtattttgggtataaaaataatctttatggaacaaaaggaacatttgctgtgtaactgggagtctcgtgagggAAAACATCCGAAGATGATCAAATGTAatcggttaatttgattgcttttctgatttttgtgaccaagcttcctgatgctaagtgtacataatgctatgctaggctatcgataaacttacacaaacgcttggattgctttcgctgtaaagcataatttcaaaatctgagacgacagggtgattaacaaaaggctacgcTGTGTTTctcaatattgcacttgtgatttcatgaatatttgtTAGTAATATAATTTGATTGTtccgctatgctattcagcggttgctgacaaATTATCCCGCTACAGGGATAgatagcgtcaagaagttaaagagatgctttacattgaaatacagatagatgcagtagtcccagagttaatgatccaaggtcagtttatattatacaggaagtgtTATTAAAGatatgctttacattgaaatacagatagagatgcagtagtcccagagttaatgatccaaggtcagttttgcgtTTCACCTCCTGATTGAGGACTAACAATGTTagaataaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052564.1 True 4779 mRNA 0.44 2 28987346 28992237

Neighbor

gene id symbol gene type direction distance location
LOC118965279 LOC106595049 coding upstream 9733 28975483 ~ 28977613 (+)
LOC110527622 LOC106564406 coding upstream 65949 28912640 ~ 28921397 (+)
LOC110527611 rbm45 coding upstream 207161 28754476 ~ 28780185 (+)
mtx2 mtx2 coding upstream 300553 28666416 ~ 28686793 (+)
LOC110527602 LOC105007064 coding upstream 619316 28306267 ~ 28368030 (+)
LOC110527630 NA coding downstream 18741 29010978 ~ 29013251 (+)
LOC110527620 NA coding downstream 34094 29026331 ~ 29035347 (+)
LOC110527621 NA coding downstream 94874 29087111 ~ 29099411 (+)
LOC110527619 LOC106578599 coding downstream 337347 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 397380 29389617 ~ 29396184 (+)
G593188 NA non-coding upstream 7152 28979901 ~ 28980194 (+)
G593228 NA non-coding upstream 32475 28954088 ~ 28954871 (+)
G593170 LOC107661334 non-coding upstream 95275 28891822 ~ 28892071 (+)
G593163 NA non-coding upstream 110297 28876643 ~ 28877049 (+)
G593160 NA non-coding upstream 112309 28874696 ~ 28875037 (+)
G593260 LOC106593246 non-coding downstream 27423 29019660 ~ 29024943 (+)
G593274 NA non-coding downstream 52208 29044445 ~ 29059575 (+)
G593291 NA non-coding downstream 88354 29080591 ~ 29080798 (+)
G593295 NA non-coding downstream 91967 29084204 ~ 29084530 (+)
G593171 NA other upstream 94921 28892163 ~ 28892425 (+)
G593144 NA other upstream 146263 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1112925 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1280052 27703583 ~ 27707294 (+)
G592134 NA other upstream 1503550 27483050 ~ 27483796 (+)
G593283 NA other downstream 67461 29059698 ~ 29064592 (+)
G593513 LOC106610831 other downstream 535790 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 1039722 30031959 ~ 30032621 (+)
G596168 NA other downstream 1910942 30903179 ~ 30903887 (+)

Expression


Co-expression Network