LOC110527620


Basic Information

Item Value
gene id LOC110527620
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29026331 ~ 29035347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609021.2
TTTAAGGCAGTGCTGTTAGTGACGTATAATCGagtggacggaacgcttctttcaacagcagcaacagtaagtcagccacctcggtagcttgctagacaaaCTAGCCGAAACAATAAAGCTCTTTAGACGCTTTAGTGTTTATAGGCCACTGTGTTTTAAACCCACTTCTGTGGTCTACTTAGTTGTccgatttaatttcatatttacggtgttgttattattcagctagcgggctggttaagttagcaatagcctagctagctaacatccccgaccatgagttcactaaactactctccttctgctaaagaagaggcggtctgctggacggagaaagaatcTCTcgttaaagaggaggaggatatcacagtaaaacaagaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgctttcagagtgaaagaagaggaggatgttacagtaaaagaggAAGAAAAGTATttcagagtgaaggaggagaaggatgcattttttggagtgaaagaggaagagggggagagggggactgTCACATTGAaaaaggaagaagaggaggaaactggatatctgggcccAGTTTCCCAAGGGCATCTTAAGGCATCCAGTGGCTCTAACGATGAACGTGCCCTGGTTAACACgagagagagatgtgactatcgtggatcctctggggagcctcaacaacatcacgATGCTGATGAGGCAGAGGAGAGTCTCTCCACatcagaacacctcaagaaacaccagTGGAGACCCACAGGAAAGAAatctcactgctgctctgactgtgggaaaagcttttCAACATCACAGATTTTGAAGctgcaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgggaagagttttactacatctagcaatctgactatacaccagagaacacacacaggagataaatCATTTAgttgtaatcaatgtgggaagagttactTAAGGTTAAAATCACTAAAAGTACATATGagaattcacactggagagaaaccttacagctgtgatcaatgtggaaagagttttgttcAATCTAGCGATCTGacagtacaccagagaacacacacaggagagaaaccttttagctgtgatcaatgtgggaagactTTTATTGCATCTAGCAATCTGACTATACACCagcggacacacacaggagagaagccttatagctgtaatcaatgtgggaagagttttattaCATCTAGCCAACTGACTTCACACCAGcgagtacacacaggagagaaactttACCACTGTTCAAATTGTGGGAAAAGCTTCTCAACATCGCAGACATTGAAGCTgcaccagaaaacacacacaggagagaaaccttacagctgtgatcagtgtgggaagagttttattaCATCTGGCAATCTGACTATACACGagcggacacacacaggagagaaaccttatagctgtaatcaatgtgggaagagttttaataCATCTAGTCATCTGACTACACACCAGAGAGTACACACAGGAGACAAACCGTATAGCTGTGATGAATGTGAGAAGAGTTATACTGCATCTAGCCATCTGACCAGACACCAGAGAGTACACACAGGAgataaaccttatagctgtgatcaatgtgggaagagtttcactgCATCTAGTGATCTGAcggtacaccagagaacacacacaggagagaaaccttttagctgtgatcagtgtgaaAAGAGATACTCTCGTAAAAGatctctgatcaaacatcagaaaatacatacatgaagGAGATATCtcatgatatcaatgaaataacaatgtagaatgtttttaacattgtagtaggagtattttaaggAATTTCATACTGTAGAACCCTAAACGTTTGCCCCATTCAATTGATTTCAGCATGATATGTATATTAGCCTCGGGAAAAATCCTGGCTCTGAATTGAAAGAGTGATTTAATAAAAAGTGACTAACACAAAAAGAGCTGTGTTACACTTAA
>TU676187
gagagggggactgTCACATTGAaaaaggaagaagaggaggaaactggatatctgggcccAGTTTCCCAAGGGCATCTTAAGGCATCCAGTGGCTCTAACGATGAACGTGCCCTGGTTAACACgagagagagatgtgactatcgtggatcctctggggagcctcaacaacatcacgATGCTGATGAGGCAGAGGAGAGTCTCTCCACatcagaacacctcaagaaacaccagTGGAGACCCACAGGAAAGAAatctcactgctgctctgactgtgggaaaagcttttCAACATCACAGATTTTGAAGctgcaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgggaagagttttactacatctagcaatctgactatacaccagagaacacacacaggagataaatCATTTAgttgtaatcaatgtgggaagagttactTAAGGTTAAAATCACTAAAAGTACATATGagaattcacactggagagaaaccttacagctgtgatcaatgtggaaagagttttgttcAATCTAGCGATCTGacagtacaccagagaacacacacaggagagaaaccttttagctgtgatcagtgtgaaAAGAGATACTCTCGTAAAAGatctctgatcaaacatcagaaaatacatacatgaagGAGATATCtcatgatatcaatgaaataacaatgtagaatgtttttaacattgtagtaggagtattttaaggAATTTCATACTGTAGAACCCTAAACGTTTGCCCCATTCAATTGATTTCAGCATGATATGTATATTAGCCTCGGGAAAAATCCTGGCTCTGAATTGAAAGAGTGATTTAATAAAAAGTGACTAACACAAAAAGAGCTGTGTTACACTTAACATGTTGGTGACCCACTTTAATCAAAatgtaacacttcaaaatgtagctagctgcTTTCTGcaaattgtcctctaaccagggatgtacacattattcccagattccgtgtgatttttgagctgttagttttaacaggatgtgcaacctcatctccctcctctcgcaCAATGGATTTCAACACGATATCAATGAATGATGACAAATAAGTGTTGAGTACCTTTGTTTAGAGACGCCTAAATGTAAATGCATCACTCCCAAATTTAGCTGATTGTCATGTTTTATTATTCCATGCCTCACCATTAAGTGAATTATTGCCAAATCATATTTACAATTCATGTAACATTTAGTAATCATAATTATTTATGCAACCGACAATTTTCGGGTATAATTATATTGACATTGTTGCCCTGCTTTTAGAATATCAGGGTTCATTCTCAGATGTGCTAACCCAAATGTACTAGAGTATGACATTGGGGACTGGGCCCCGATCCAACAACATACCTATCgagtgaaccctgaaaagagagagaagctcaGCAGTGAGGTGGAAAGTTACTACGGACATTGCAGGAGTTTCcttttgaaatcagacatgtcCGTAGTAAGGACAACTTGGTTGCTGATTGTCTCAAGGGTGGGCAGTCAAAGAGATTTGCGTTTAGCCAGTGCGTTACCATGGATCCCAATTTATTTTGACATGTTTTTCCTTGTTGGAGATTATTTTTGTTTGGGCTCTTTTC

Function

NR:

description
zinc finger protein OZF-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609021.2 False 2007 mRNA 0.42 2 29026331 29034606
TU676187 True 1629 lncRNA 0.40 3 29026862 29035347

Neighbor

gene id symbol gene type direction distance location
LOC110527630 NA coding upstream 13080 29010978 ~ 29013251 (+)
LOC118965280 NA coding upstream 34094 28987346 ~ 28992237 (+)
LOC118965279 LOC106595049 coding upstream 48718 28975483 ~ 28977613 (+)
LOC110527622 LOC106564406 coding upstream 104934 28912640 ~ 28921397 (+)
LOC110527611 rbm45 coding upstream 246146 28754476 ~ 28780185 (+)
LOC110527621 NA coding downstream 52505 29087111 ~ 29099411 (+)
LOC110527619 LOC106578599 coding downstream 294978 29329584 ~ 29503787 (+)
LOC118965283 NA coding downstream 355011 29389617 ~ 29396184 (+)
LOC118965282 NA coding downstream 379264 29413870 ~ 29442670 (+)
LOC110527623 NA coding downstream 529203 29563350 ~ 29636769 (+)
G593260 LOC106593246 non-coding upstream 1388 29019660 ~ 29024943 (+)
G593188 NA non-coding upstream 46137 28979901 ~ 28980194 (+)
G593228 NA non-coding upstream 71460 28954088 ~ 28954871 (+)
G593170 LOC107661334 non-coding upstream 134260 28891822 ~ 28892071 (+)
G593163 NA non-coding upstream 149282 28876643 ~ 28877049 (+)
G593274 NA non-coding downstream 9839 29044445 ~ 29059575 (+)
G593291 NA non-coding downstream 45985 29080591 ~ 29080798 (+)
G593295 NA non-coding downstream 49598 29084204 ~ 29084530 (+)
G593307 NA non-coding downstream 69629 29104235 ~ 29105025 (+)
G593317 NA non-coding downstream 81300 29115906 ~ 29116723 (+)
G593171 NA other upstream 133906 28892163 ~ 28892425 (+)
G593144 NA other upstream 185248 28835209 ~ 28841083 (+)
plekha3 LOC106575131 other upstream 1151910 27854006 ~ 27874521 (+)
G592445 lig4 other upstream 1319037 27703583 ~ 27707294 (+)
G592134 NA other upstream 1542535 27483050 ~ 27483796 (+)
G593283 NA other downstream 25092 29059698 ~ 29064592 (+)
G593513 LOC106610831 other downstream 493421 29528027 ~ 29528910 (+)
G593774 LOC106593940 other downstream 997353 30031959 ~ 30032621 (+)
G596168 NA other downstream 1868573 30903179 ~ 30903887 (+)

Expression


Co-expression Network