XLOC_002489


Basic Information

Item Value
gene id XLOC_002489
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 356555 ~ 358707 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005740
atggcatTGCGGCAGTTGTATAATAGGGTGTATATAATAGGTTATGTGTGCTGTGCTGTTGTGCTGTACAGAGAGACGGGTGCGCTGGACCGCAGCAGCGACATCATGATGGAGATCGACCAGCTGCAGGACACAGACTCTCTCCACCTGCAGGACAAACTGGATCAGGTGTGGCAGCTCAGAGAAACCATCACTGCTGAAGTGTTGAGCGCTCCAGAATCTCCAGCTGAGAAAAACAACCCAGAGCGAGTGGACAGAAGCACAGAGACGGAGCAGAGCGACACACACGTGCAGGAGCTACAGAGGCATCTTCATAAGGCTGAGAGGAGGAACCGAGAGTTGGAGCAGGAGATGGCAGGCCTGAGGGAGCAGATCCTCCGACTGAGCGCTGTCAGAAACACAGGTCAGATCATCATCTCTCACACTGATCATCAGATCTCCTCATAACTCGCACATCCCACAGCTCAGAATATCTGTACAGAAGCTCAGCGATGAGAATAGAGATAAATATCCCATCCAGGAATAGATGACGAGACACATGC

Function

GO:

id name namespace
GO:0033036 macromolecule localization biological_process
GO:0051345 positive regulation of hydrolase activity biological_process
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0051020 GTPase binding molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005740 True 542 lncRNA 0.51 3 356555 358707

Neighbor

gene id symbol gene type direction distance location
XLOC_002488 NA coding downstream 1898 354093 ~ 354657 (-)
XLOC_002486 vaspa coding downstream 13991 323401 ~ 342564 (-)
XLOC_002487 CABZ01049604.1 coding downstream 16528 339912 ~ 340027 (-)
XLOC_002485 akt2l coding downstream 33786 311722 ~ 322769 (-)
XLOC_002484 NHLRC3 coding downstream 46661 304596 ~ 309894 (-)
XLOC_002490 CU929346.1 coding upstream 1530 360237 ~ 373575 (-)
XLOC_002491 NA coding upstream 57290 415997 ~ 421653 (-)
XLOC_002492 NA coding upstream 187495 546202 ~ 548201 (-)
XLOC_002493 rfx3 coding upstream 241457 600164 ~ 641609 (-)
XLOC_002494 glis3 coding upstream 285867 644574 ~ 690170 (-)
XLOC_002480 NA non-coding downstream 175851 179863 ~ 180704 (-)
XLOC_002473 NA non-coding downstream 304581 48851 ~ 51974 (-)
XLOC_002472 CABZ01064670.1 non-coding downstream 311069 32901 ~ 45486 (-)
XLOC_002495 NA non-coding upstream 298344 657051 ~ 657406 (-)
XLOC_002499 NA non-coding upstream 1064534 1423241 ~ 1433140 (-)
XLOC_002501 CABZ01066320.2 non-coding upstream 1182556 1541263 ~ 1544095 (-)

Expression


Co-expression Network