trnar-ccu-29


Basic Information

Item Value
gene id trnar-ccu-29
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29237037 ~ 29255482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnar-ccu-29
gccccagtggcctaatggataaggcactggcctcctaagccaggaattgtgggttcaagtcccatctggggtg
>TU677880
agacactggcctcctaagccatggattgtgaggtttagtctttgctgaagtggctgaaagcagagttgtgcagcggatgcatgctgggcccataaccagttcgtactggttgtgaaaggtagacattgccccagtggcctaatggataaggcactggcctcctaagccaggaattgtgggttcaagtcccatctggggtggttggaaacattgtggcccagcagaagcgtgctaggtccattacccagtggtcgatggatcgaaaacattttctgctaaccatagcatttaag
>TU677881
agacactggcctcctaagccatggattgtgaggtttagtctttgctgaagtggctgaaagcagagttgtgcagcggatgcatgctgggcccataacccagaggttgatggatcgaaaacattttctgctaaccagctttttatagcatttaagtgcgaacaaatattttttaaaaatgcgtagtttcattccatgtgtaagtgccattatacatttttttttacctcttccatcagttcgtattggtcatattgattacaaagatccccagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ccu-29 False 73 mRNA 0.58 1 29237130 29237202
TU677880 False 293 lncRNA 0.51 2 29237037 29255482
TU677881 True 272 lncRNA 0.40 2 29242926 29255482

Neighbor

gene id symbol gene type direction distance location
trnar-ccu-28 NA coding downstream 4704 29232354 ~ 29232426 (-)
trnar-ccu-27 NA coding downstream 11386 29225672 ~ 29225744 (-)
trnar-ccu-26 NA coding downstream 12618 29224440 ~ 29224512 (-)
trnar-ccu-25 NA coding downstream 13572 29223486 ~ 29223558 (-)
trnar-ccu-24 NA coding downstream 14526 29215055 ~ 29222643 (-)
trnar-ccu-30 NA coding upstream 3730 29240932 ~ 29241004 (-)
trnar-ccu-31 NA coding upstream 5240 29242442 ~ 29242514 (-)
trnar-ccu-32 NA coding upstream 6472 29243674 ~ 29243746 (-)
trnar-ccu-33 NA coding upstream 8538 29245740 ~ 29245812 (-)
trnar-ccu-34 NA coding upstream 12275 29249477 ~ 29249549 (-)
G594707 NA non-coding downstream 76551 29160367 ~ 29160579 (-)
G594696 NA non-coding downstream 100148 29136580 ~ 29136982 (-)
G594702 NA non-coding downstream 101758 29135061 ~ 29135372 (-)
LOC110527153 NA non-coding downstream 115437 29118893 ~ 29133938 (-)
LOC110527632 LOC106564416 non-coding upstream 40990 29278113 ~ 29282861 (-)
G594727 NA non-coding upstream 48242 29285444 ~ 29285678 (-)
G594732 NA non-coding upstream 57182 29294384 ~ 29294824 (-)
G594733 NA non-coding upstream 57820 29295022 ~ 29295455 (-)
G594735 NA non-coding upstream 59640 29296842 ~ 29297324 (-)
G594636 LOC106593246 other downstream 211081 29024407 ~ 29026049 (-)
G592298 NA other downstream 1753350 27482957 ~ 27483780 (-)
G591808 NA other downstream 2070662 27166175 ~ 27166468 (-)
LOC110527590 LOC106575121 other downstream 2651623 26575613 ~ 26585525 (-)
G590443 NA other downstream 3078825 26157993 ~ 26158305 (-)
G594762 NA other upstream 179653 29416855 ~ 29495130 (-)
G594900 NA other upstream 330999 29568201 ~ 29593462 (-)
G594905 NA other upstream 352791 29589993 ~ 29625899 (-)
G594906 NA other upstream 362429 29599631 ~ 29612736 (-)
G594968 LOC106591690 other upstream 484474 29721676 ~ 29727490 (-)
trnar-ccu-37 NA coding upstream 199 29255681 ~ 29255753 (-)
trnar-ccu-38 NA coding upstream 1988 29257470 ~ 29257542 (-)
trnar-ccu-39 NA coding upstream 3221 29258703 ~ 29258775 (-)
trnar-ccu-40 NA coding upstream 6680 29262162 ~ 29262234 (-)
trnar-ccu-41 NA coding upstream 9861 29265343 ~ 29265415 (-)

Expression


Co-expression Network