LOC118965278


Basic Information

Item Value
gene id LOC118965278
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29416507 ~ 29421654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983135.1
GCGTCTTTCAGGCGATGCTGCCAGcatgacgtataatctagtggacgggtcTTCAGAAACAGCTCGTCAACCACCTCtgtagcttgctagccaacaaAGCCGAAAGATTCAAGCTATTTATAAGCTTTCGGTGGATATTAGCTACTGTGTTTTAGACACACTACTGTTGTATCTACTTGTTAACCTATTTAATGTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGctggctggttaagttagcactAGTCTTGTCGCTAATGATAAACATCACCGACCATGAGTTCCCTAAACTTCTCCCCTCCTGTTAAAGtagaggaggtctgctggacggagaaagatgctctggggctgaacattgttgtgaaagaggagaaggaagaagaagatgttacagtaaaacaagaagagaaagacgtttttggaatgaaggatgaagagggggagattactgtcacattaGAGGAGGACGAAGAAGAGAAGACTGGGGagctgattaacaccagtaaatacagagagagacaggactatcgtggatcctctggtgatcctcaacaacatcatgatgctgacgaggcagagaagtgtctctccagatcagaacacctcaagaaacacctgcagagacccacagggaagaaatctcaccactgctctgactgtgggaagagttattCAAGATCAGATTCACTTAAACTACATAAGAGAATACACCAGcgagtacacacaggagagaaatctcacCACTGTtttgactgtgggaagagttactTAAAATCAGATTCACTTAAACTACACCtgagaatacacactggagagaatcTTCATTGCTGCTcagactgtgggaagagattcacctcTTCAGCAGACCTTAAAATACATCAGagaattcacactggagagaaaccttttggctgtgatcaatgtgggaagagttttactaagCCAAGCAACTTGAAATCACACCAgcgaatacacactggagagaaaccttatggctgtgatcaatgtgggaagagttttactcagtcaagcggcctgatatcacaccagatatcacacacaggagagaaaccatacagctgtactcaatgtgggaagagttttgctacATCTGGCTATCTGAAgatacaccagagaatacacacaggagagaaaccttttagctgtgatcaatgtgggaagagttttgctacATCTGTCTATCTGAAAATACACcagagaatacatacaggagagaaaccttatagctgtaatcaatgtgggaagagttttactcagtcaagcAGCCTGAAATCACACCAAAGaatacacaggagagaaatcccatagctgtaatcaatgtgggaagagttttactcagtcaaacagcctgatatcacaccagcGGACACACACATGAGAGAAACCTTATGGCTATGATCAATGTgacaagagatactctgataaaatatatctaatcaaacatcagaaaatacatacatgaaggagttgtttcaCGATATCAATGAAATAtggtcacaatgtagaatgttttaacattgtagtctGAGTATTTGAATGAATTTCACAATGTAGCACCCTAAATGTTTGCCCCCTGTTCATTTGATTTTAGCATGATATGGATTTTAGCCTCAGGGgaaaaatccaggctctgaattgaGAGTATTATTTATGTGATTTAACAAAAATGTGCTAACAAAAAAAGAGTTGTGTTACACTTACCACGTTGGTGACCCtcttgaatcaaaatgcaacacttcaaaatgtagccATCTGTTTACATCTATTACTATTATGTAAATTAACAAAAAGTGACTAACAAAAAAAGAGCAGGTGTGATGTTGTTTGTATGATGATGTCGTGTTTtgtttataaaataaaataaaaatattttcagGTCTTTTTTCAATGACTTGATAAATTAATTTCAACGTACTTGTCGCCGATTCACATGGATGCAGTATAATACATTATATTAACAATCCTACATCACTCTAGTATTTCTTTACAACATTCAAATGCTAATTGTCTTTATCCAACGACTGAAGAAGTATGAATCAAATCACCTCTTATTTCAAACATTCCGCCTGacaaagatacatgttttattattccatGCCTCACCATTCATTAATTTAATTATTGCCAATACATATTAACAAAGGGGTGTATATTTGATTTTGATATTTCATATTTACAATTCCTGTAACGTTTAATTTGACTTTAGTTTTTTGGGTTTCTTGATGGAGAACGTTAGAACaaatattggagtaaaacaagcttatattttgtgtTGGATGTTGCATCCAATTGTTAATATTTTAATCAATGACATTTCCTTAAAATGCTCAGTCTTTCAGTTAAGTTTCTGTTTGTTGTGTACtaaatatttcagtttatttttatttgtttttttcctgtgaagccATTGTCTTGAATCCATGTCTAAAATGTActatataaataaagcttgatttgatcaTATTGCAAAACAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983135.1 True 2504 mRNA 0.37 2 29416507 29421654

Neighbor

gene id symbol gene type direction distance location
LOC118965281 LOC106591606 coding downstream 2682 29402557 ~ 29413825 (-)
LOC110527632 LOC106564416 coding downstream 133646 29278113 ~ 29282861 (-)
trnar-ccu-45 NA coding downstream 141195 29275240 ~ 29275312 (-)
trnar-ccu-44 NA coding downstream 144076 29272359 ~ 29272431 (-)
trnar-ccu-43 NA coding downstream 145587 29270848 ~ 29270920 (-)
LOC110527636 LOC106586052 coding upstream 32391 29454045 ~ 29495280 (-)
LOC110527615 LOC106610831 coding upstream 104073 29525727 ~ 29539694 (-)
LOC118965276 LOC106578600 coding upstream 307122 29728776 ~ 29733555 (-)
LOC110527637 NA coding upstream 412068 29833722 ~ 29838609 (-)
trnaw-cca-2 NA coding upstream 468995 29890649 ~ 29890720 (-)
G594804 LOC106593411 non-coding downstream 52507 29363090 ~ 29364000 (-)
G594776 NA non-coding downstream 82118 29333171 ~ 29334389 (-)
G594739 NA non-coding downstream 107959 29301706 ~ 29308548 (-)
G594737 NA non-coding downstream 117562 29298688 ~ 29298945 (-)
G594735 NA non-coding downstream 119183 29296842 ~ 29297324 (-)
G594762 NA non-coding upstream 55878 29416855 ~ 29495130 (-)
G594864 NA non-coding upstream 85147 29506801 ~ 29507087 (-)
G594913 NA non-coding upstream 202771 29624425 ~ 29628074 (-)
G594902 NA non-coding upstream 213158 29634812 ~ 29688275 (-)
G594920 NA non-coding upstream 219472 29641126 ~ 29643298 (-)
G594636 LOC106593246 other downstream 390458 29024407 ~ 29026049 (-)
G592298 NA other downstream 1932727 27482957 ~ 27483780 (-)
G591808 NA other downstream 2250039 27166175 ~ 27166468 (-)
LOC110527590 LOC106575121 other downstream 2831000 26575613 ~ 26585525 (-)
G590443 NA other downstream 3258202 26157993 ~ 26158305 (-)
G594900 NA other upstream 146547 29568201 ~ 29593462 (-)
G594905 NA other upstream 168339 29589993 ~ 29625899 (-)
G594906 NA other upstream 177977 29599631 ~ 29612736 (-)
G594968 LOC106591690 other upstream 300022 29721676 ~ 29727490 (-)
G595022 NA other upstream 406299 29827953 ~ 29829565 (-)

Expression


Co-expression Network