LOC110527615 (LOC106610831)


Basic Information

Item Value
gene id LOC110527615
gene name LOC106610831
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29525727 ~ 29539694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983128.1
AGCGTGACGTGTAATCTAGTGGACGGGGCGGGACGCTCCTTCAACAGCTAGTCAGACACCTCGGTAGCTTTCTAGCAAACATAGCTACAACATTCACGCTCTTTACACTGGTTTGGTGTACATTAGTCGCTGTGTATTAAACACACTTCTGTCGTATGTACTTGTTGGCCCATTTAAATTTGATATTTACGTATTTTGTCAGCTAGCTGGTTTGCTATGTTAGCTTAGaactaggctagtcgctaatgctagctaacatctccgaccatgagttcactaagctACTTTCCTCCTGCTAAAGGAGAgggggtctgctggacggagaaagaacctctcgtgaaagaggaagaggaagagaaggatgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaggaagagaaagacgtttcagtgaaagaggAAGACgctttcagagtgaaagaggaggatttCACAGTAAAAGAAGTGGAGGATTTCACAGTAAAAGAAGTGGAGGATTTcacagtaaaagaagaggaggatttcacagtaaaagaagaggaggatgtagtTTTTGGACTGAAAGAGGGGGAGATGACTGTTACATCCacaaaggaggaggaagaagaggaggttggagatctgggcccggtttcccaaaccCATCTTAAAGCATCCAATGATTCTAACGATGTTAACACTAgagagagacgggacaatcgtggatcctctggggatcCTCAACAAAATCATGAtgatgacgaggcagagaagagtctctccacatcagaactcctcaagaaacaccagcagagacccacagggaagaaatctaactgctgctctgactgtgggaaaagaTTCAACTCTTCATTAAAACTTAAAATACATCAACGAATTCACACTGAAGAGAAACGTTttggctgtgatcaatgtggtaAGAGTTTTACTGCATCTAGCCATctgactatacaccagagaacacacacaggagagaaacctcatagctgtgatcaatgtgggaagagttttactcggCCAGACAGCCTGAtggtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagtttctctaCATCTGGCCAGCTGACtttacaccagagaatacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactacatctggcCAGCTGACTTTACACCAGAGaatgcacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttatttCATCTGGCCAGCTGACtttacaccagagaatacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactacatctggcCAGCTAACtcttcaccagagaacacacacaggtgagaaaccgtatagctgtgatcaatgtgggaagagttttactagaTCTGACCATCTGACtttacaccagagaatacacacaggagaaaaatcgtatagctgtgatcaatgtgggaagagttttactagaTCTGGCCATCTGACtttacaccagagaatacacacaggagaaaaacgttatagctgtgatcaatgtgggaaaaaatactctgataaaagatctATGATTAAACATCAGAAACattgtttcatgatatcaattaAATAATGTCACAATgaagaatgttttaacattgaaGAAGGATTATTTTAATCATGTCACAATGCAGAACCCTAAATGTTTGTCCCCTGTTGTATTGATTTcagcatgatatggatattagcaTCAGGGGAAAACTCCAGGCCTGAATTGGAATAGTACTATTTATATGATTTAACAAAAAGTGACTAACAAAAAAAGAGTTGTTACACACCACGTTGGTGAGCCACTTAAATCAAAATGCAACACGAGCTGTTTTCTAcaaattgtcctctaaccagtgatgtacacattattcccagattccgTGTGGTTTTTGCTACTttagttttaacaggacgtgcAACCTCATCTCCATCCTATCGCACAATTGATTTCAACATATCGATGATTGATGACAAGTAAGTGTTGTGTTCCTTAGTTTTTCGACCCCTAAATTTAAATGCATCTCTCCCAAAttgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtgaaagatatctcccatttccatgtgttttcttTTAGTTGTGTTTGTGTCAACAGCACGCACAACCTGATTTCCCCCCGAAtcgatatcagtgatttattgctaCTTGTCAAAACAACAGCGTTTTTGGTGCTTGTGCAATTTATAAGGTGCTTTTTTAAGAAAATACTTCATATGATTATTGTGGCAGATGTTTGGGTAGATAGTACATTTTATGTTTAGGATTTCAATTCATCACAAACTTTTTCTGCATTTGGACTATTGATTTGGACACATTATTAAAACTGTGACATTGGGGCTATCCCACCTAGCAAAATGTAGTTAAAAATAAGAATATGCAAAAGTTGAAAAGAAAACAATTTAATTTCAATGTACTTGCAGCCTATACACATGGACTCAGTATAATAAATTGGCCTGTTGTCAAATTGTTAATAAAATTgatatcactccagtatttcttTACAACATTCAAATGCTAATTGTCtttattccactactgaagaagcaTGACTCGAATCATCTACTCATATTTCAAACGTCCAGCCTGacaaaagatacatgttttattattccatGCCTCACCATTTAGTTAAGTTAATTATTGTCAATACATATTAACAGAGGGGTACATTTGGTTTTGATATTTCATATATACAATTCATGTAACATTTAGTAATCAGAATTATTTATGCAACCACCTAACAATTTTTGTGTACAATTATATTGGAATTGTTATCTTGATTTTAGAATATCAGGGATCATTCTCAGATGTGCCAACCAAAATGTACTAGAGCATGATATTGGGGACTGGACCCCGATCCAACAACATACCTATCTagtgaaccctgaaaagagagagaagctctGCAGTTAGGTGGAAAGTTACTAGGGATATTGCAGGAGTTTCCTCTTGAAATCAGACATGTCCGTGATAAGAACAACTTGGTTGCTGATTGTCTCAAGCATGGGCagtcaaaatgttttgtgttttgcATTTAGCCTGTGCGTTGCCATGGATCACAATTTATCTTGACTGCACTTTTTTCCGTATTGGAGATGGAGTTTTGTTTGGGCTAGTTCCAAGGGGAcgggacgagagttctagaagctagtgagttttaggaagaaGAGGTCTAGAAGCTTGTGAGTTTTAGGATTCTAAAGAAAGAAAAACGAGTAAAAAAATGAGAttgtatattattttttttttagaaataagtgtttttttcttgtttttaattgttgacagccagtagacacCATGTTTATATTGTAGAAGGTGAAGCATTGTAGTTGATTATAATGAGAAATGaaagttgttttctgttggtggagagcaaacttgtccaacaaaaatataggatatatttgttGTCTTAAGGTGTTACtggctttggtttttccatttatgttttgaggttggactttagctCGTTAGCATGTAGGGTGCACAGATTGGTGACACCTCGTTAGTcaatgtgttacacctgtgctggcttgtccatctcgttagggtttaatattttaatcaatggatttttctcagggtcATTAGTCTTTCAGTTCTTATTCTTCTGtttttttatcctcttatgtttgttgtggCAAATATTTGTTCATATTCatagttttttatacatttttttcctgtgaagccattgcgttgcatccatgtctgaaatgtgctgtataaataaagcttgatttgatttgaa
>XM_036983130.1
CCAGCGTGACGTGTAATCTAGTGGACGGGGCGGGACGCTCCTTCAACAGCTAGTCAGACACCTCGGTAGCTTTCTAGCAAACATAGCTACAACATTCACGCTCTTTACACTGGTTTGGTGTACATTAGTCGCTGTGTATTAAACACACTTCTGTCGTATGTACTTGTTGGCCCATTTAAATTTGATATTTACGTATTTTGTCAGCTAGCTGGTTTGCTATGTTAGCTTAGaactaggctagtcgctaatgctagctaacatctccgaccatgagttcactaagctACTTTCCTCCTGCTAAAGGAGAgggggtctgctggacggagaaagaacctctcgtgaaagaggaagaggaagagaaggatgttacaatacaaaaacaagtagagggtgaggctgttaccgtgaaagaggaagagaaagacgtttcagtgaaagaggAAGACgctttcagagtgaaagaggaggatttCACAGTAAAAGAAGTGGAGGATTTCACAGTAAAAGAAGTGGAGGATTTcacagtaaaagaagaggaggatttcacagtaaaagaagaggaggatgtagtTTTTGGACTGAAAGAGGGGGAGATGACTGTTACATCCacaaaggaggaggaagaagaggaggttggagatctgggcccggtttcccaaaccCATCTTAAAGCATCCAATGATTCTAACGATGTTAACACTAatctcctctagagcagtgatgttttggcgCTGTTGCTTTGCAACACTTTGCAAcatcaactccctccaaagattttctatggggttgagatctggagactggccagcccactccaggaccttgaaatgcttcttacaaagtcactccttcgttgcccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983128.1 False 3884 mRNA 0.38 2 29525727 29539692
XM_036983130.1 True 860 mRNA 0.45 2 29537604 29539694

Neighbor

gene id symbol gene type direction distance location
LOC110527636 LOC106586052 coding downstream 30447 29454045 ~ 29495280 (-)
LOC118965278 NA coding downstream 104073 29416507 ~ 29421654 (-)
LOC118965281 LOC106591606 coding downstream 111902 29402557 ~ 29413825 (-)
LOC110527632 LOC106564416 coding downstream 242866 29278113 ~ 29282861 (-)
trnar-ccu-45 NA coding downstream 250415 29275240 ~ 29275312 (-)
LOC118965276 LOC106578600 coding upstream 189082 29728776 ~ 29733555 (-)
LOC110527637 NA coding upstream 294028 29833722 ~ 29838609 (-)
trnaw-cca-2 NA coding upstream 350955 29890649 ~ 29890720 (-)
LOC118965350 LOC106593417 coding upstream 487009 30026703 ~ 30028202 (-)
LOC110527614 NA coding upstream 574940 30114634 ~ 30119849 (-)
G594864 NA non-coding downstream 18640 29506801 ~ 29507087 (-)
G594762 NA non-coding downstream 30597 29416855 ~ 29495130 (-)
G594809 NA non-coding downstream 74328 29375839 ~ 29451399 (-)
G594804 LOC106593411 non-coding downstream 161727 29363090 ~ 29364000 (-)
G594776 NA non-coding downstream 191338 29333171 ~ 29334389 (-)
G594913 NA non-coding upstream 84731 29624425 ~ 29628074 (-)
G594902 NA non-coding upstream 95118 29634812 ~ 29688275 (-)
G594920 NA non-coding upstream 101432 29641126 ~ 29643298 (-)
G594921 NA non-coding upstream 104202 29643896 ~ 29650361 (-)
G594922 NA non-coding upstream 106721 29646415 ~ 29649760 (-)
G594636 LOC106593246 other downstream 499678 29024407 ~ 29026049 (-)
G592298 NA other downstream 2041947 27482957 ~ 27483780 (-)
G591808 NA other downstream 2359259 27166175 ~ 27166468 (-)
LOC110527590 LOC106575121 other downstream 2940220 26575613 ~ 26585525 (-)
G594900 NA other upstream 28507 29568201 ~ 29593462 (-)
G594905 NA other upstream 50299 29589993 ~ 29625899 (-)
G594906 NA other upstream 59937 29599631 ~ 29612736 (-)
G594968 LOC106591690 other upstream 181982 29721676 ~ 29727490 (-)
G595022 NA other upstream 288259 29827953 ~ 29829565 (-)

Expression


Co-expression Network