LOC110527623


Basic Information

Item Value
gene id LOC110527623
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29563350 ~ 29636769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609025.2
gtcagcagatggcggtgTGGGAATTTAAGGTTATGCTGTTGGTGTGACGAATAttctagtggacggaacgcttctttcAACAGCAGCAAAAGTTAGCCAGACACCTCTGTAGCTTGCTAGACAAAATAGCCGAACCAATAAAGCTCTTTAGACGCTTTCGTATATATTAACCACTGTGTTCTAAACCCTCTTCCGTCGTCTAGTTAGTTATCCGATTTAATTTAATATTTACGGTGTTGTTATTAGTCAGCTAGCGGGCTGGTTAAGTTcgcattagcctagctagctaacatccccgaccatgagtTTACGAAGGTACTCTCCtaagaaagaagaggaggtctgctggacggagaaagagggTCTGTGGCTGAACGTTGtcgtgaaagaggaggaagaggatgtcaaaatacaaaaacaagtagagagtgaggctgttatagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggagaaagatgttacagtaaaagtagaagaggatgaggaagatgcCGTTTTTGAAGTTAAAGAGGTGAAGGGGGAGATGACTGTCACATCGAGAaatgaggaggaagaagaggaggaaactggATATCTGGGCCATAAGATGGTTTTGAGAAACCGGGCCCTGATGAACACTAGACAGATAcgggactatcgtggatcctctggggagcctcaacaacataaTGATGCTgatgaggcagagaagagtctctccacatCAGAACTCTTCAAGAAACACCTgcagagacccacagggaagaaatctcattgctgctctgactgtgggaaaatATTAAACTCCTCAGTAAAACTTAAAATACATCAAAGAATTCACACTGAAGATAAACCTTTTGGCTGTACcaaatgtgggaagagttttgttcgtTCTAGCTGTCTGAAgcgacaccagagaacacacacaggagagaaaccttttagctgtaatcaatgtggaaAGAGCTTTACCCAGTCAAGAAGCCTGATATCACATCAGAGAACACACTCAGGAGAGAAACGAGAGAAACCatatagctgtactcaatgtgggaagagttttgttcttTCTAGCTGTCTGAAgagacaccagagaacacacacaggagagaaatattttagctgtactcaatgtgggaaaaGTTTTGTTGATTCTTGGTGTCTGAAgagacaccagagaacacacacaggagagaaaccttttagctgtACTCAGTGTGGAAAGAGGTTTACCCAGTCAAGAAACCTGATAtcacatcagagaacacacacaggagagaaacgagagaaaccatatagctgtactcaatgtgggaagagttttgtttgTTCTAGCAAGCTGAAGGTACACcatagaacacacacaggagagaaaccttttagctgtaatcaatgtggagAGAGTTTTATTATATCTAGCCAGCTGAAGGTACACcatagaacacacacaggagagaatccttttagctgtaatcaatgtggaaagagttttaataTATCTAGCCAGCTGAaggtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgtgAAGAGTTTTACAACATCTAGCAATCTGATTatgcaccagagaacacacacaggagagaaacctttcagctgtgatcagtgtgaaATGAGCTACCCTCGTAAAAGatctctgatcaaacatcagaaaatacatacatgaagTAGTTGTTTCATGACATCAGTGAAATAATGTAGAATGTTGTAACAtagtagtaggagtattttaatgatgtcacaatgtcaaaCCCTAAATGTCTACCCCTGTTTTATTGATTTTAacatgatatggatattagcaTCAGGGGAAAGatccaggctctgaattgaaagagtactatttatgtgatttaatgcaacacttcaaaatgtagaTAACTGTTTTCTACAAGTTGTCCCATAACCAGTGATGTACACATAATTCCGCATGGTTTTTGAGCTGTTTGTTTTAGCGTTTTTGGTGCTTGTGCAGTTTGTAAGGTGCTTGTTTAAATAAATACTTAATATGATTATTGTGGCAGATGTTTGTGTATTTAGCACATTTTATGTTTAGGTTTTCAATTTATCACACACTTTTTCTGGATTTGGACTATTGATTTGGACAACTTTAAACTGTGACATTGGGGATATCCCACCTAGCAAAATGTTGGTGAAAATAAGACTATACCCAATGTACAATATAAGTTGCAGTTGAAAGTGAAAGTTGACAAGAAATCTATTTAATTTCAACGTACTTGCATCCTATACACATGGACACAGTATTTTGAATTGAGTCTATAATCAGTTTTAGGGACAGGAGTCCCGCTAGTTATACACATGGACCCAGTATAATGAATTGAGTCTATAATCAGTTTTAGGGACAGTAGTCCCGGTAGTCATGGTAATAATGGATCCGCTAGCTACGAGTGTAGATGGGAAGGTGATGCGCTTACAGCAGCAATAGCAGCGGGGAGGCCAGGTTGCTCTGTGTATATGTTGTCAATGCTGTGATGTTCACATTGGTGCGCAAGGCTTGTGTTATTCTATGTCACTGTACAATAAACTATATCACACCCATTA
>TU676590
AAGTATACAGTTTAGCGATTTCGACGCATGCCTCGTAGCTCCGGAATAAACATAACTTCCCTACCGAAAAGTTGACAAAACCAAAAGGAGCAAGCAGGTAACCAGTTACTAATGCTTCAACCACACTGTTTTGTTACACTGGACAGATAcgggactatcgtggatcctctggggagcctcaacaacataaTGATGCTgatgaggcagagaagagtctctccacatCAGAACTCTTCAAGAAACACCTgcagagacccacagggaagaaatctcattgctgctctgactgtgggaaaatATTAAACTCCTCAGTAAAACTTAAAATACATCAAAGAATTCACACTGAAGATAAACCTTTTGGCTGTACcaaatgtgggaagagttttgttcgtTCTAGCTGTCTGAAgcgacaccagagaacacacacaggagagaaaccttttagctgtaatcaatgtggaaAGAGCTTTACCCAGTCAAGAAGCCTGATATCACATCAGAGAACACACTCAGGAGAGAAACGAGAGAAACCatatagctgtactcaatgtgggaagagttttgttcttTCTAGCTGTCTGAAgagacaccagagaacacacacaggagagaaatattttagctgtactcaatgtgggaaaaGTTTTGTTGATTCTTGGTGTCTGAAgagacaccagagaacacacacaggagagaaaccttttagctgtACTCAGTGTGGAAAGAGGTTTACCCAGTCAAGAAACCTGATAtcacatcagagaacacacacaggagagaaacgagagaaaccatatagctgtactcaatgtgggaagagttttgtttgTTCTAGCAAGCTGAAGGTACACcatagaacacacacaggagagaaaccttttagctgtaatcaatgtggagAGAGTTTTATTATATCTAGCCAGCTGAAGGTACACcatagaacacacacaggagagaatccttttagctgtaatcaatgtggaaagagttttaataTATCTAGCCAGCTGAaggtacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtgtgAAGAGTTTTACAACATCTAGCAATCTGATTatgcaccagagaacacacacaggagagaaacctttcagctgtgatcagtgtgaaATGAGCTACCCTCGTAAAAGatctctgatcaaacatcagaaaatacatacatgaagTAGTTGTTTCATGACATCAGTGAAATAATGTAGAATGTTGTAACAtagtagtaggagtattttaatgatgtcacaatgtcaaaCCCTAAATGTCTACCCCTGTTTTATTGATTTTAacatgatatggatattagcaTCAGGGGAAAGatccaggctctgaattgaaagagtactatttatgtgatttaatgcaacacttcaaaatgtagaTAACTGTTTTCTACAAGTTGTCCCATAACCAGTGATGTACACATAATTCCGCATGGTTTTTGAGCTGTTTGTTTTAGCGTTTTTGGTGCTTGTGCAGTTTGTAAGGTGCTTGTTTAAATAAATACTTAATATGATTATTGTGGCAGATGTTTGTGTATTTAGCACATTTTATGTTTAGGTTTTCAATTTATCACACACTTTTTCTGGATTTGGACTATTGATTTGGACAACTTTAAACTGTGACATTGGGGATATCCCACCTAGCAAAATGTTGGTGAAAATAAGACTATACCCAATGTACAATATAAGTTGCAGTTGAAAGTGAAAGTTGACAAGAAATCTATTTAATTTCAACGTACTTGCATCCTATACACATGGACACAGTATTTTGAATTGAGTCTATAATCAGTTTTAGGGACAGGAGTCCCGCTAGTTATACACATGGACCCAGTATAATGAATTGAGTCTATAATCAGTTTTAGGGACAGTAGTCCCGGTAGTCATGGTAATAATGGATCCGCTAGCTACGAGTGTAGATGGGAAGGTGATGCGCTTACAGCAGCAATAGCAGCGGGGAGGCCAGGTTGCTCTGTGTATATGTTGTCAATGCTGTGATGTTCACATTGGTGCGCAAGGCTTGTGTTATTCTATGTCACTGTACAATAAACTATATCACAC
>TU676591
CTGAACGTTGtcgtgaaagaggaggaagaggatgtcaaaatacaaaaacaagtagagagtgaggctgttatagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggagaaagatgttacagtaaaagtagaagaggatgaggaagatgcCGTTTTTGAAGTTAAAGAGGTGAAGGGGGAGATGACTGTCACATCGAGAaatgaggaggaagaagaggaggaaactggATATCTGGGCCATAAGATGGTTTTGAGAAACCGGGCCCTGATGAACACTAGTAAGTACTGGCACAcatctagttccatgctggtactatagttactgtagtctagttccatgctgttactattgtctagttccatgctgttactatagtccagttccatgttactatagttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttactattgcctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttactatagtctagttccatgctgttactatagtctagtttcatgctgttactatagtctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgttactttagactagttccatgctgttactataatctagttcaatgctgttactatagtctagttccatgcttttactatcatctagttccatgttactatagttactatagtctagttccatgctgttactatagtctagttccatgctgttattatagcctagttccatgctgttactatagcctagttccatgctgttactatagtctagttccatgttgttactatagcctagttccatgctgtttttATAGTcaagttccatgctgttactataatctagttccatgttactatagttactatagtctagttccatcctgttactatagtgtagttccatgctgttactatagtgtaCTTCCATgatgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttactatagtctagttccatgctgttactatagtctagttccattctgttactatggtctattcccatgctgttactgtagtctagttccatgctgttactttagactagttcaatgctgttactatagtctagttcaatgctgttactatagtctagttccatgcttttactataatctagttccatgttactatagttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagtgtacttccatgctgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagcctagttccatgctgttactatatcctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttactatatcctagttccatgctgttactatagtctagttccatgcttttactatagcctagttccatgctgttactatatcctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgtttctatagtctagttccatgctgttactatagtctagttccatgcaattcctattgtctagttccatgctgttactatagcctagttccatgctgttactatagtctagttccattctgttactatggtctagttccatgctgttactatagtctagttccatgctgttactgtagtctagttccatgctgttactttagactagttcaatgctgttactatagtctagttcaattctgttactatagtctagttccatgcttttactataatctagttccatgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagtctagttccatgctgttactatagcctagttccatgctgttactatagcctagttccatgctgttccTATAATcaagttccatgttactatagttactatagtctagttccatcctgttactatagtgtagttccatgctgttactatagtgtacttccatgctgttactatagcctagttccatgctgttactatatcctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgttactatagccttgttccatgctgttactatagcctagttccatgctgttactatatcctagttccatgctgttactatggtctagttccatgctgttactatggtctagttccatgctgtttctatagtctagttccatgctgttactatagtctagttccatgcaattactattgtctagttccatgctgttactatagtctagttccatgttgttactatagtctagttccatgctggtactatagttactgtagtctagttccatgctgttactaaagtctagttccatgctgttactatagtctagttccatgttgttactatagttccacgttgttactatagtctagttccatgatGTTACTATAGcttagttccatgctgttactataatctagttcaatgctgttactatagtctagttccatggttttac

Function

NR:

description
PREDICTED: S-antigen protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609025.2 False 2637 mRNA 0.40 2 29563809 29636769
TU676590 False 2095 lncRNA 0.39 3 29563350 29636763
TU676591 True 2927 lncRNA 0.38 7 29564179 29617073

Neighbor

gene id symbol gene type direction distance location
LOC110527619 LOC106578599 coding upstream 60022 29329584 ~ 29503787 (+)
LOC118965282 NA coding upstream 121139 29413870 ~ 29442670 (+)
LOC118965283 NA coding upstream 167625 29389617 ~ 29396184 (+)
LOC110527621 NA coding upstream 464398 29087111 ~ 29099411 (+)
LOC110527620 NA coding upstream 529203 29026331 ~ 29035347 (+)
LOC110527616 NA coding downstream 49647 29686416 ~ 29703056 (+)
LOC118965277 NA coding downstream 157928 29794697 ~ 29804454 (+)
trnak-uuu-3 NA coding downstream 254110 29890879 ~ 29890951 (+)
LOC110528937 NA coding downstream 295056 29931825 ~ 29944679 (+)
LOC110527618 NA coding downstream 338197 29974966 ~ 29983540 (+)
G593493 NA non-coding upstream 24140 29487795 ~ 29539669 (+)
G593513 LOC106610831 non-coding upstream 34899 29528027 ~ 29528910 (+)
G593444 NA non-coding upstream 100145 29420905 ~ 29463664 (+)
G593441 NA non-coding upstream 145316 29416857 ~ 29418493 (+)
G593370 NA non-coding upstream 254856 29301795 ~ 29308953 (+)
G593597 NA non-coding downstream 77944 29714713 ~ 29715027 (+)
G593628 NA non-coding downstream 144358 29781127 ~ 29822082 (+)
G593662 NA non-coding downstream 201671 29838440 ~ 29839079 (+)
G593695 NA non-coding downstream 272068 29908837 ~ 29909102 (+)
G593708 NA non-coding downstream 284653 29921422 ~ 29970210 (+)
G593283 NA other upstream 499217 29059698 ~ 29064592 (+)
G593171 NA other upstream 671384 28892163 ~ 28892425 (+)
G593144 NA other upstream 722726 28835209 ~ 28841083 (+)
G593774 LOC106593940 other downstream 395190 30031959 ~ 30032621 (+)
G596168 NA other downstream 1266410 30903179 ~ 30903887 (+)
G596297 NA other downstream 1444952 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 2372545 32007023 ~ 32013203 (+)
G599004 NA other downstream 3599044 33235813 ~ 33236636 (+)

Expression


Co-expression Network