LOC118965277


Basic Information

Item Value
gene id LOC118965277
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 29794697 ~ 29804454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983132.1
gacggaacgcttctttcaacagcagcaacagttcGTCAGCCAgctcggtagcttgctagacaaaaTAGACGAACCAATGAAGCTCTTTAGACGCTTTAGTGTATATTAGCCACTGTGTTTTAAACCCACTTCTGTCGTCTAGTTAGTTATCCGATGTAATTGCACTGTGTTGTTATTAGTCAGCTAGcgggctggttaagttagcattagcctagctgGCTAACATCTCCAACCATGAGGTTACTAAGCTACCCTCCTTCTAAAGAGGAGGAAgatatcacagtaaaacaagaagtagaggttgaggctgttactgtgaaagaagaggaagaggcgttcagagtgaaagaggaggaggatgttacagtaaaaggagaggaggaagagaaagagggtctgtggctgaacattgtcgtgaaagaggaggagggagagaaggatgttacaatacaaaaacaagtagagggtgaggctgttacagtaaaagaagaagagaaagacgtttcagtgaaagaagagggagacgcgttcagagtgaaagaggaggatgttacagtaaaaggaGAGGATGAAGCAGTTTAtggagtgaaggaggagggggagatgactgttacatcggaagaggaggaggaaactggatatctgggcccAGTTTTCCAAACACATCTTAAGGCATCCAACAACGAATTTACCCATAAGATGGTTTTGAGAAACCGTTCCCTGATCaacactagagagagacgggactattgtggatcctctggggagcctcaacaacttAATGATGCTgatgaggcagagaagagtctctccagatcagaacacatCAAGAAACACCTGCAGAGATCCACAGGGAAGAgaactcactgctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagaggatccacactggagagaaaccttatagctgtggtcaatgtgggaagagatttactACATCTGGTTctctgactctacaccagagaatacacacaggagagaaaccttatatctgtggtcaatgtgggaagagttttacctCATCTAGCAGTTTGACtcaacaccagagaatacacacaggagataaaCCTTATCGATGTGtacaatgtgggaagagttttactgaGTCTGGTGGTctgactatacaccagagaacacacacaggagagaaaccttataggtgtgatcaatgtgggaagagttttggtcaaTCTGGCCATctgacagtgcaccagagaatacacacaggagataaCTCCTATAACTGTGATCAATGTGGTAAGAGTTTTATTACATCTAGCAatctgactctacaccagagaacacacacaggagagaaatctcatagctgtgatcaatgtgacaagagatactctgataaaagacatctgatcaaacatcagaaaatacatatgaaacaactccttcatgtatCATTGAACTATCCCACTTagcaaaatgtaattgaaaatatGTTGTAAATAAGGCTAATTGTCTTTATTCCACTACCGAAGAAGCATGATTCAAATCACCTACTCATATTTCAAACATCCAGCCTGACAAAATATACATGTTTAATTATTCCATGCCTCACCACAAAGTTAATTATTGCCAATATATATTAACAAAGGAGTGTGTTTGGTTTTgattattcatatttacaattcATGTAACATTTATGAATCATAATTATTTATGCAATCAACTGACATGTTTTGGCTACAATTATATTGACATTGTTGCTCTGCTTTTAAAATATCAGAGTTATGTACCAGAGCATGACATTGGGGACCTGATCCAACAGCATGCCTATTgagtgaaccctgaaaagagagagaagctctGCAGTGAGGTGGAAAGTTACTACGGATATTAAGGAGctagttctagaagctagtgagttttaggaagacgagagttctagaagctagtgagttttaggaagacgagagttctagaagttagtgagttttaggaagacgagagttctagaagctagtgagttttaggattCTATAGAAAGAAAATTTAGAAAAATAATATGattgtatattattatttagAGATACgtgttttttcttgtttttaattgttgccagccagtagacaccatgtttatattggtgaaggtgaagcattgtagttgattataatgtgaaattgaagttgttttctgttggtggtaAGCAAACCTGTCTATCAAAAATATTGAATATATGTGTTGTCTTAAAGGGGAAGGTTTTACACACTTTGGTTTTTAGGTTGGATTTTAGCACGTATAGCTCGTCAGCACGTATAGCTCCCGTTTACGTTCAGCATGTAGGacgcactgattggtgtcacctcgttagtcactgtgttacacctgtgctggcttgtccatctcgttatgGTTGAATATTGCCTCATGTTGTTAATATTTTAATCAGAGGATTTTCCTTAGTCTTTCAGTTGTTAATCTTCTGTTTTTTATCATCTTATATGTGTTGTGTATTAAATATGtctgtttatttttgtaaattcatgtgaagccattgtgttgcatccatgtctgaaatgtgctgtataaataaagcttgatatAATTTGAACGTATTGCAAA

Function

NR:

description
zinc finger protein 239-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983132.1 True 2624 mRNA 0.39 2 29794697 29804454

Neighbor

gene id symbol gene type direction distance location
LOC110527616 NA coding upstream 91641 29686416 ~ 29703056 (+)
LOC110527623 NA coding upstream 157928 29563350 ~ 29636769 (+)
LOC110527619 LOC106578599 coding upstream 290910 29329584 ~ 29503787 (+)
LOC118965282 NA coding upstream 352027 29413870 ~ 29442670 (+)
LOC118965283 NA coding upstream 398513 29389617 ~ 29396184 (+)
trnak-uuu-3 NA coding downstream 86425 29890879 ~ 29890951 (+)
LOC110528937 NA coding downstream 127371 29931825 ~ 29944679 (+)
LOC110527618 NA coding downstream 170512 29974966 ~ 29983540 (+)
LOC110527626 NA coding downstream 205214 30009668 ~ 30016052 (+)
LOC110527639 NA coding downstream 373943 30178397 ~ 30203326 (+)
G593597 NA non-coding upstream 79670 29714713 ~ 29715027 (+)
G593493 NA non-coding upstream 255028 29487795 ~ 29539669 (+)
G593513 LOC106610831 non-coding upstream 265787 29528027 ~ 29528910 (+)
G593444 NA non-coding upstream 331033 29420905 ~ 29463664 (+)
G593662 NA non-coding downstream 33986 29838440 ~ 29839079 (+)
G593695 NA non-coding downstream 104383 29908837 ~ 29909102 (+)
G593708 NA non-coding downstream 116968 29921422 ~ 29970210 (+)
G593716 NA non-coding downstream 126424 29930878 ~ 29974579 (+)
G593747 NA non-coding downstream 169173 29973627 ~ 30124102 (+)
G593283 NA other upstream 730105 29059698 ~ 29064592 (+)
G593171 NA other upstream 902272 28892163 ~ 28892425 (+)
G593144 NA other upstream 953614 28835209 ~ 28841083 (+)
G593774 LOC106593940 other downstream 227505 30031959 ~ 30032621 (+)
G596168 NA other downstream 1098725 30903179 ~ 30903887 (+)
G596297 NA other downstream 1277267 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 2204860 32007023 ~ 32013203 (+)
G599004 NA other downstream 3431359 33235813 ~ 33236636 (+)

Expression


Co-expression Network