LOC110527626


Basic Information

Item Value
gene id LOC110527626
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30009668 ~ 30016052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609028.2
gcgtgacgtataatctagtggacggttcTTCAGAAACAGCTCGTTAATCACCAaggtagcttgctagccaacatagCGTATAGCTTGAATCTTTCGGCTATCGATGTATATTAGCTACTGTGTTTTAGACACACTTCTGTCGTATCTACTTGTTAAcctatttcatttaatttgatgttattttgtaTTAGTCAGCTATAGTAGctggctggttaagttagcactAGCCTACTCGCtaatgatagctagctagctaacatccccgaaCATGAGCTCCCTAAACTACTCTCCTCCTGTTACAGAAGAGGAGGGCTGCTGGACGGAGGAAGAAGCTCTGGGGCTGAACATTGTCgcgaaagaggagaaggaagaggaggatgtcacagtaaaacaagtagagggtgatgctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaggaggaggatgttacagtaaaagaagaggaggaagataaaGATGAGGATGTCGTTTTTGGAGTGCAGAAGGAAggggagattactgtcacattgaaagatgaagaggaggagataggagatctgattaacaccagagagagaggtgactatcgtggatcctctggggagcctcaacaaccgcATGATgccgaggcagagaagagtctctacAGACCAGGATacctcaagaaacaccagcagaaaCCCAAAGGAAAGAGAACTCaccgctgctctgactgtgggaagagttttgttttcTCAGGACAATTAAAATCACACCAGAGAACGCATACAGGAGAGAAAtcatatagctgtgatcaatgtgggaagagttttactacatttAGCAATCTGAtgatacaccagagaacacacacaggagagaaaccttatagctgtgatcaatgtggtaATAGTTTTGTTTCATCTGGCCTTCTGACTGTACATcagagaatacatacaggagagaaaccatatagctgtactcaatgtgggaagagttttactcagctaagcaacctgatatcacaccaaagaatacacacaggtgagaaaccttatagctgtactcaatgtgggaagagttttactcagtcaaccagcctgatatcacaccagagaacacacacaggagagaaaccttatagctgtgatgaatgtgggaagagttttactacatctagcaAACTGActctacactacagaacacacacaggagaaaaacctTTTAGCTGTTCTCAATGTGACAAGAGATACTATGATAAATGTTCTCTGATTacacatcagaaaatacatgcaTGAAGGcgttgtttcatgatatcaatgaaatTATGTCAGAATGTAGAATGTTTAACAATGTacaaggagtattttaatgatgtcacaatatAGAACCCTAAATGTTTGCCccctgttctattgatttcaacatgatatgGATTTTAGCCTCAGGGGGgaaatccaggctctgaattgaaagagTACTATTTATATGATTTAACAAAAAGTGAGTAACAAAAAAGTTCTGTCTTACACTTACTATGTTGGTGGCCCACTTTAATCACAAGTTACACTTGAATAAAAATGTAGCTAGAGGTTTTCTACAAATTGTCCTCAACCAGTGATGTACACATTACTCTCAGATTCCATAtggtttttgagctgttagttttaacaggacgtgcaacctcatctccctcctctcggcagaattgatttcaacatgatattAATGAGTGATGACAAATTAAGTGTTGCCCTTATTTGTTTAGCGACCCCTACATTTAAATGCATCTctccaaaatgtagctgactgtcttctgcagattgtcctctaaccagtgaggtgAAAGATATCtcctatttctatgtgtttttttagttgtgttagGTACAACCTGATTTCCCCCCTAATTGATTTCACTGATTTATTGCTTCATGCCAAAACAACAGCGTTTCTGGTTCTTGTGCAGTACGTAAgatgcttgtttaaaaaatacaagTAATATGTATTATTGTGGCAGATGTTTGTGTTTATATAGCTCAATTTATCAcaaactgtttctgcatattggttattgatttggacacaTTAAAACTTTGTTTTGACATTGGGCTATCCCACCTAGCAAAATGTCATTGAAAAGAGGTTGAGAAGGAGACTATGCCCGGTGTACAATATACGTTCAGTTTTAGTTGAAGTGAAAGTTGAGATGTTGTTTTTTCAATTCACTTGCAGCCTATACACATGGACGCAGTATAATAACTTGGTCTGTAACAATTTTATTCGCATTCTtacatcactccagtatttcttTGCAACATTCAAATGGTAATTGTCTTTATTCCCACTGTCAAAGAAGCATGTCTCAAATCACTTCATATTTCAAACACATCCATGCCTCACCATGAAGTTAATTATTGCCAATACATATTAACAAAGGGGTGTACATTTGGTTTTCATATTTACATTTAGTAATAATAATTATTTATGCAACCAATCAGGGTTCATTCTCAGATGTGCCAAACCAAATGTACTAGAGCATGACATTGGGGATTGGGCCCCGATCCAACAACATGCCTATCTagtgaaccctgaaaagagagagaagctctGCAGTGAGGTGGAAAGTTACTACGGATATTGCAGGAGTTTCCTCTTGAAATCAGACATGTCCGTGGTAAGGACAACTTGGTTGTTGATTGTCTCCAGCGGGGTGTAGTCAAAAAGTTTTGTGTTTAGCCAGTGCGTTACCATGGATGACAATTTATTTTGACTGCATGTTTTTACGTATTGGAGATGAGTTTTGTTTGTGCTCGTTCCAAggggacgagagttctagaagctagtgagtttttcAAAAATAGAttgtagaaaaatatatatatttagaaatgtgttttttcttgtttttaattggTGACAGCCAGTAGACACCATGTTTATATTGTAGAAGGTGAAGCATTGTAGTTGATTTTAATATGAATtggaagttgttttctgttggtggtgagTAAACTTGTCCAACAAAAGTATAGGATATATTTGTAATCTTAAGGGGGAAggtgttacaggctttggtttttccatttatgttttgaggttggactttagcacaTATAGCTCGTTAGCACTGTGAGGGAATTTTCTTTTAAACCTTACTAATGCATGTGTATTAAAATATTATTCTTTAAGCCGAGGCATTGGGCTTGAGATTGGTAAAGAACCTAACTCCTATAACATAGAAAAGTGTGTTGATAGAGGCCTGTTCTGGGTGTGTAGAATGAACCCATGATGTTCAGACACTCAGCCAAGAATATGACAGAAACTGACTGGTTCCTCTTGATCCTCCACAGAGTAAAGGTTTTTTCCTGCACACCAGTAACAGAGCTATTGTGTTGGAGCCTGTTTCTGAGGAAAGATTGTGGTGGAGAAATCATGATTAGCTAAGTAACATGGATAATTAAGATGTCTTATCTGTAGAATATGCTGTTATGAACTATTGACCTCTTGCTATTAGAATGTCTCCTTTCTGGATCTGGTGTTGGCAGCTGCACTTCCCCCCTCAAATGGGCCTCAGTCACCTTGGGTCCAAAGAAGCGAGATGTCAGGCTTATCGATCACATGTCCCTgttgctatgcagaatatcagcaTCTATCACATTTCCCGGTTGCTATGCAGAATATTAGCATCTATCACATGTCCCTGTTGCTAGGCAGAATATCAACAGGGAGGAAGGCAAAGGAGATCAGAAGGAAACATTGTTTCCATATGTGAACTGTGTGTTTATTGCGAAacatgtgaagggatggtgtgAGTAATGGGGAACCAATCACTTGTCTCCACAGTGTCTGTGCGTCAGTCACCTACTCCTAGGGGCAGATTGTATTTGGGGCCCAAGGTCTGACACAGGATGTGTGGGGTTGGTGTTTGGAACCATTGTACGTCATCTCTGAGGTTGCACCTATCCTGAGATAGTTTATAACCCAGAAGCAAGCCTCCTTGTAAAAACAAGTATTTTAATAAAAGTAAAAACCTTGATTGATTATTAATTTTGCGCCTCCTCATTATTGATTATGGGTAGAATTTCCACCCCAGCACGTATGGCGAACCGATTGGTATCACCTCGTTAGTTAGAATGTGTTGGCTTGTCCATCTTGTTAGGGTTGGATGTTGCATCCAATTGTTAATATTGTAATCAATGACATTTCCTTAGGGTGCTCATTAGTCTTTCAGTTGTTATTCTTCTGTTTTTTATCCTATtattgttgtgtagtaaatatttctttttattttcaatgttttCTAAACATATTTTCCTGTGAAGTCATTGTGttgcatccatgtctgaaatgtgctgtataaataaagcttgattt

Function

NR:

description
gastrula zinc finger protein XlCGF17.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609028.2 True 4397 mRNA 0.39 2 30009668 30016052

Neighbor

gene id symbol gene type direction distance location
LOC110527618 NA coding upstream 26128 29974966 ~ 29983540 (+)
LOC110528937 NA coding upstream 64989 29931825 ~ 29944679 (+)
trnak-uuu-3 NA coding upstream 118717 29890879 ~ 29890951 (+)
LOC118965277 NA coding upstream 205214 29794697 ~ 29804454 (+)
LOC110527616 NA coding upstream 306612 29686416 ~ 29703056 (+)
LOC110527639 NA coding downstream 162345 30178397 ~ 30203326 (+)
LOC110527642 cssa12h20orf85 coding downstream 445307 30461359 ~ 30499559 (+)
LOC110527643 chmp4b coding downstream 493209 30509261 ~ 30536127 (+)
LOC110527644 sahhb coding downstream 545534 30561586 ~ 30578870 (+)
if2b LOC106582627 coding downstream 607432 30623484 ~ 30636008 (+)
G593760 NA non-coding upstream 9329 29998366 ~ 30000339 (+)
G593716 NA non-coding upstream 35089 29930878 ~ 29974579 (+)
G593708 NA non-coding upstream 39458 29921422 ~ 29970210 (+)
G593695 NA non-coding upstream 100566 29908837 ~ 29909102 (+)
G593662 NA non-coding upstream 170589 29838440 ~ 29839079 (+)
G593832 NA non-coding downstream 103153 30119205 ~ 30126801 (+)
G593835 NA non-coding downstream 106075 30122127 ~ 30123286 (+)
G593836 NA non-coding downstream 108752 30124804 ~ 30125940 (+)
G595268 NA non-coding downstream 190539 30206591 ~ 30206882 (+)
G595304 NA non-coding downstream 216453 30232505 ~ 30232724 (+)
G593513 LOC106610831 other upstream 480758 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 646317 29329584 ~ 29503787 (+)
G593283 NA other upstream 945076 29059698 ~ 29064592 (+)
G593171 NA other upstream 1117243 28892163 ~ 28892425 (+)
G593144 NA other upstream 1168585 28835209 ~ 28841083 (+)
G593774 LOC106593940 other downstream 15907 30031959 ~ 30032621 (+)
G596168 NA other downstream 887127 30903179 ~ 30903887 (+)
G596297 NA other downstream 1065669 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 1993262 32007023 ~ 32013203 (+)
G599004 NA other downstream 3219761 33235813 ~ 33236636 (+)

Expression


Co-expression Network