LOC118965350 (LOC106593417)


Basic Information

Item Value
gene id LOC118965350
gene name LOC106593417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30026703 ~ 30028202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965350
AAAAAGCAAACGCAAATTCTTCACAAGGAAAAAGTGATACAGACACGTCACAGACATCGCAGGCTATATACAATCTTACAACTTTTTAATAAACAAGCAAAATGGCAGGACGAAGACCCAAGGGCCAAGAAGATGGATGTAGCAATTATTGAGATTATTGCCACTGACAACCAGCCATTCGCAATGGTGTCTGACGTTGATTTTCAGTGGCTGATTACTCTTGCTGAACCCCGGTACAGGATCAAAGATAAAAATATTTTCGCATCGAGATACTAGATAAAACACATGAAAGAGTTGTGATGAAAATGAAGAATCTGGTGGCACCAGTCAATGCTCCACACATGGCATTCACAACTGACTGCTGGTCAGGCACTACAGAGTCCCTGATGAGCCTTACTGGACATTTCATTGACAATGTCTGGACAAGAAAGCAGGTTGTGCTGAATGTCAAGACTATGACTGGATCACACACAGGAAACTACATCAGAGAGATGTTTTTGACTATGTTGGAATACTGGGAAATCCACACAGCATGTGTAGTGCTGGTCCTCAGGGACAGTGGGGCAAACATGGTGAAAGGTATGAGACTGGCAGAGCATCTAGACTTCAGCTGCAGTGCGCTCACCCTATAGCTTGTAATCAATGATGGCCTATCCAGTCAGAGCTGTGCTAGACATTATTGCCATGTTGAAGAGCTGTGCAACTCACTTTGACCACTCTGTACTGGCCAAACAGAGGCTGAGGGCCATTCAGGAAGAGCTTGGCCTCCCCAAACACAGCATCATCCAAGCAGTTCAAACTCGCTGGAACTCAACACTACACATGTTGCAGAGGATGTTTGAACAGAGGCATGCACTGAATGTGTATGCAGGTGAATACGGACACATCAGCAGTTTGTCTGCTGCACAGTTGGACATTGTCTCTAACCTAATTGAGACTCTGGCACCTATGGAGGAGGTGACACTGGAGATGAGCCACTACAACTCTACAGCAGCATGCACAATCTCCAGTGTGTCGGTGCTGAAGCTGATGCTACAGCAGGAGGGTTCTTCTACTCAAGGCATCAAAACTTTATGGAAGACTGTTAAGGGATTTTTTATCAATAAttactaattatgtatacatttcaatcaggactgactaatcagaatagtattatgttactgtatagatgtatgaattttcttttaatcctagtactgaatataatgtgtgtaattataatcaagaattagaacattgactgtctgttccttggtagaaatgaatgaagttatcgtcagactggctagaatgcttatctacacaggaagACCTTTGCTCGGTCATAAATTATCTAAATTGGTGGGAGActatgtgggaaggcttgagaactatactgccattgtacTGGAGTGGAGAAGAGACGGGACAGTTCGAAAACTAAtgatgtcattttcagtttataacctgtggtaaattgtatcgtgttcagtactctcgagaataaacactactgat

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965350 True 1500 mRNA 0.42 1 30026703 30028202

Neighbor

gene id symbol gene type direction distance location
trnaw-cca-2 NA coding downstream 135983 29890649 ~ 29890720 (-)
LOC110527637 NA coding downstream 188094 29833722 ~ 29838609 (-)
LOC118965276 LOC106578600 coding downstream 293148 29728776 ~ 29733555 (-)
LOC110527615 LOC106610831 coding downstream 487009 29525727 ~ 29539694 (-)
LOC110527636 LOC106586052 coding downstream 531423 29454045 ~ 29495280 (-)
LOC110527614 NA coding upstream 86432 30114634 ~ 30119849 (-)
LOC110527624 LOC106595982 coding upstream 93773 30121975 ~ 30126819 (-)
LOC110527641 LOC106582623 coding upstream 285177 30311282 ~ 30394791 (-)
LOC110527645 NA coding upstream 557301 30585503 ~ 30593851 (-)
LOC110527646 asip coding upstream 575895 30604097 ~ 30611268 (-)
G595119 NA non-coding downstream 44925 29981005 ~ 29981778 (-)
G595033 NA non-coding downstream 82392 29941843 ~ 29944311 (-)
G595045 NA non-coding downstream 94414 29931712 ~ 29932289 (-)
G595083 NA non-coding downstream 95968 29929540 ~ 29930735 (-)
G594977 NA non-coding downstream 182537 29743409 ~ 29844166 (-)
G595216 NA non-coding upstream 129232 30157434 ~ 30165205 (-)
G595244 NA non-coding upstream 138738 30166940 ~ 30167233 (-)
G595282 NA non-coding upstream 189360 30217562 ~ 30217834 (-)
G595298 NA non-coding upstream 199421 30227623 ~ 30227862 (-)
G595303 NA non-coding upstream 201855 30230057 ~ 30230257 (-)
G595022 NA other downstream 197138 29827953 ~ 29829565 (-)
G594968 LOC106591690 other downstream 299213 29721676 ~ 29727490 (-)
G594905 NA other downstream 400804 29589993 ~ 29625899 (-)
G594906 NA other downstream 413967 29599631 ~ 29612736 (-)
G594900 NA other downstream 433241 29568201 ~ 29593462 (-)
G595364 NA other upstream 281969 30310171 ~ 30310934 (-)
G596094 NA other upstream 815979 30844181 ~ 30844624 (-)
G596039 NA other upstream 834655 30862857 ~ 30863320 (-)
G596352 NA other upstream 907963 30936165 ~ 30936614 (-)

Expression


Co-expression Network