LOC110527639


Basic Information

Item Value
gene id LOC110527639
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30178397 ~ 30203326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609045.2
tataatctagtggacgatTCTTCATAAACAGCTCGTCAACCACCTCGGCagcttgctagccaacatagCCGAAAGATTCAAGCTATTTAGAAGCTTTCGGTCTATATTAGCTACCGTGTTTTAGACACAACTCTGTCGTATCTACATGTTAACCTATTTCATTTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGCTGGCTGGTTAAGTAAGCACTAGCCTAGTCGCtaatgatagctagctagctagctaacatccccgaaCATGAGCTTCCTAAACTTCTCTCCTCCTGCTAAAGAAGAGgcggtctgctggacggagaaagaagctctggggctgaacattgtcgtgaaagaggagaaggaagaagaggatgTCACAGTTaaaaaacaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaagaggaggaggatgttactgtgaaagaagaggaagaggaggatgcagtttttggagtgaagaaggaaggagagattaCTGTCACATTGAAAGATGAAGGGGAGATAGGAGATCTGAGTAACACCAGAGAGAAACCAGACTCTCACTCTGACAGCGGGAAGAGTCCTTCAGGGGAACCAGACCCAGAGACGCCCAAACCAGCGAGAGaacaccactgctcccactgtgaAAATAGTTTTTGCTGTTTAGGGAACCTAAAActgcatgagaggacacacactggagaaaagcctttccaatgttcccagtgtgaaaatgcatgagagaatacacacaggagaaaagccttaacTCATGCCACATTGGGAACAGTGATTTAATCAGGATGGGAACCTAAAAGCTCATAAGAGgaaacacacaggagaaaagcctttccaatgttcccagtgtggaaagagttttactaaGATAGGGCAATTAAAAGAACGAGAGAATACACAAAGGAGAAAAGCCattccaatgttcccagtgtggaaagagttttccTCGGATAGGAAACCTAAAAAAGCATGCGAGactacacacaggagaaaagccttaccaatgttcccagtgtggaaagagttttgccGTGTTAGCTAACCTGAaaaggcatgagagaatacacacaggagaaaagcatTTTCTGCTCCCAGTGTAAAAATAGATTTTCACGAATGGCGTACCTTAAAGCTCATGAGAGGATACAaaggagaaaagcctttccactgctcccagtctggaaagggttttacctggTCAAGTAGCCTGAAGGAGCATAAGAGGATAAACACGGTAAAAGTCCTACCACTGCTCTCTGTGTGGAAGAACATTCAGAGAACCTGAAATCAAATGAGAGAATAGAAAGGCTGTATTCTGACTTATATTTTTGACTGAgaatttgtgtttttgtttgtgccGCATGAAATCATATTGTGTATGattacacctgtctatataaggtcccacagttgacaatgcatgtcagggcaaacaccaagcaatgaggtcgaataaattgtccttagagctccgagacaggattgtgtcgaggcacagatctgggg
>XM_021609044.2
tataatctagtggacgatTCTTCATAAACAGCTCGTCAACCACCTCGGCagcttgctagccaacatagCCGAAAGATTCAAGCTATTTAGAAGCTTTCGGTCTATATTAGCTACCGTGTTTTAGACACAACTCTGTCGTATCTACATGTTAACCTATTTCATTTAATATTACGTTATTTTGTATTAGTCAGCTATAGTAGCTGGCTGGTTAAGTAAGCACTAGCCTAGTCGCtaatgatagctagctagctagctaacatccccgaaCATGAGCTTCCTAAACTTCTCTCCTCCTGCTAAAGAAGAGgcggtctgctggacggagaaagaagctctggggctgaacattgtcgtgaaagaggagaaggaagaagaggatgTCACAGTTaaaaaacaagtagagggtgaggctgttacagtgaaagaagaagagaaagacgtttcagtgaaagaagaggaagacgcgttcagagtgaaagaagaggaggaggatgttactgtgaaagaagaggaagaggaggatgcagtttttggagtgaagaaggaaggagagattaCTGTCACATTGAAAGATGAAGGGGAGATAGGAGATCTGAGTAACACCAgagagagacatgactaccGTGggtcctctggggagcctcaacaacctcatgatgctgacaaggcagagaagagtctctccacatttgaacacctcaagaaacaccagcagatATCCACAGGGAAGATACCTCACTGCCtttctgactgtgggaagagattcacctcagcaggcattaaaattcatcagagaatcCACACAGTAGAGAAATCGTATaactgtactcaatgtgggaagagttttactcattcatccagcctgatatcacaccagagaacacacacaggagagaaaccttatagctgtactcaatgtgggaagagttttactcattcatccagcctgatatcacaccagagaacacacacaggagagaaaccttatagctgtattcaatgtgggaagagttttactcattcatccagcctgatatcacaccagagaacacacacaggagagaaaccatatagctgtactcaatgtgggaagagttttactcattcaaccagcctgatatcacaccagagaacacacacaggagagaaaccttatagctgtggtcaatgtgggatgAGTTTTACTCAGCAAAGcagcctgatatcacaccagagaacacacacaggagagaaaccatatagctgtgatgaatgtgggaagagttttgatACATCTAGCCATCTTACTGTACACCAAAGatcacacacaggagagaaaccgtatagctgtactcaatgtgggaagagtttttttACATCTAGCCATCTGAAgatacaccagagaatacacacaggagagaaaccttatagctgtactcaatgtgggaagagttttttaacatctagccagctgaagatacaccagagaacacacacaggagagaaaccgtatagctgtggtcaatgtggcaagagttttactcagctaagcaacctgatatcacaccagagaacacacacaggagagaaaccgtatAGCTGTGATGAATGTGGGAATAGTTTTACAAAGTTGTGTAATCTGACtcttcaccagagaacacacacaggagagaaaccttatagctgttctcaatgtgggaagagtttttttACATCTAGCCATCTGaatatacaccagagaacacacacaggagagagaccttatagctgtgatccatgtgggaagagttttacgcAGCTAAGCAGCCTGATttcacaccagagaatacacacaggagagaaaccttatagctgcaCTCAATGTGTGAAGAGTTTTACTCACCTAAGcagcctgatatcacaccagagaacacacacaggagagaaaccgtatAGTTGTGATcgatgtgggaagagttttactcagctaagcagcctgatatcacaccagagaatacacacaggagagaaaccttatagctgtactcaatgtgggaagagttttactcacaTAAGCaccctgatatcacaccagagaacacacacaggagataaaccatatagctgtaatgaatgtgggaagagttttgttcaatCTGGCAATCTGacagtacaccagagaacacacacaggagagaaattgtacagctgtaatcaatgtgggaagagttttgttcaatCTGGCAATCTGACAGTACACCAGataacacacacaggaaagaAATCTTGAGATAATCTGATAAAACTCTGGTCAAGTTTTATCTGATCAAGTAATAGAAAATACATACATGGAGTGGTTTCATGATATCAAGTAATTAATGTCACACTTCACTTTGTAGTATGAGTATTTTGATATTGTCAAAGCCTAATGTAGAAGCCTAATCATATGCCCCCTTATCAtttgat

Function

NR:

description
zinc finger protein 2 homolog isoform X1

GO: NA

KEGG:

id description
K09228 KRAB; KRAB domain-containing zinc finger protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609045.2 False 1585 mRNA 0.43 2 30178397 30184539
XM_021609044.2 True 2424 mRNA 0.42 2 30178397 30203326

Neighbor

gene id symbol gene type direction distance location
LOC110527626 NA coding upstream 162345 30009668 ~ 30016052 (+)
LOC110527618 NA coding upstream 194857 29974966 ~ 29983540 (+)
LOC110528937 NA coding upstream 233718 29931825 ~ 29944679 (+)
trnak-uuu-3 NA coding upstream 287446 29890879 ~ 29890951 (+)
LOC118965277 NA coding upstream 373943 29794697 ~ 29804454 (+)
LOC110527642 cssa12h20orf85 coding downstream 258033 30461359 ~ 30499559 (+)
LOC110527643 chmp4b coding downstream 305935 30509261 ~ 30536127 (+)
LOC110527644 sahhb coding downstream 358260 30561586 ~ 30578870 (+)
if2b LOC106582627 coding downstream 420158 30623484 ~ 30636008 (+)
LOC110527647 LOC106582629 coding downstream 530257 30733583 ~ 30854816 (+)
G593832 NA non-coding upstream 51596 30119205 ~ 30126801 (+)
G593836 NA non-coding upstream 52457 30124804 ~ 30125940 (+)
G593747 NA non-coding upstream 54295 29973627 ~ 30124102 (+)
G593835 NA non-coding upstream 55111 30122127 ~ 30123286 (+)
G593760 NA non-coding upstream 178058 29998366 ~ 30000339 (+)
G595268 NA non-coding downstream 3265 30206591 ~ 30206882 (+)
G595304 NA non-coding downstream 29179 30232505 ~ 30232724 (+)
G595305 NA non-coding downstream 33948 30237274 ~ 30237492 (+)
G595309 NA non-coding downstream 38197 30241523 ~ 30241761 (+)
G595330 NA non-coding downstream 51641 30254967 ~ 30255230 (+)
G593774 LOC106593940 other upstream 145776 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 649487 29528027 ~ 29528910 (+)
LOC110527619 LOC106578599 other upstream 815046 29329584 ~ 29503787 (+)
G593283 NA other upstream 1113805 29059698 ~ 29064592 (+)
G593171 NA other upstream 1285972 28892163 ~ 28892425 (+)
G596168 NA other downstream 699853 30903179 ~ 30903887 (+)
G596297 NA other downstream 878395 31081721 ~ 31082290 (+)
LOC110531742 LOC106594194 other downstream 1805988 32007023 ~ 32013203 (+)
G599004 NA other downstream 3032487 33235813 ~ 33236636 (+)
G599123 NA other downstream 3087200 33290526 ~ 33295528 (+)

Expression


Co-expression Network