LOC110528941 (LOC103372673)



Basic Information


Item Value
gene id LOC110528941
gene name LOC103372673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30648989 ~ 30686105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036984423.1
ATGTCTCTGAAGGTTCACACCAGCAATGACACCAACAAGAATGACCCCAAGTCCATCAACTCACACGTGTTCATCGGTAACCTCAACACAGCCGTGGTGAAGAAGTCGGATGTGGAGAGTATTTTCTTGAAATATGGCCGCGTGCTGGGCTGCTCTGTGCACAAGGGCTACGCCTTTGTCCAGTATGCCAGCGAGAGGCATGCCCGTGGGTCTGTTATAGGGGAGAATGGACGAGTGATGGCGGGACAGACTCTGGACATCAACATGGCGGAGGAGCCCAAGCCCAACAGACCCAGAGGACGGAAGAGGTTTGCCGCTGGTCTCTACAGTGGCTATGACTTTGATAATGACTACTACAGAGATGAATTCTATGACAGGCTGTTTGAATATTGGGGCAGAGTGTCGCCAGTGCCTCGCATAGTGCCAGTTAAGTGGCCTCACATGGCCATGCCCCTGGTGCGTCAGGTCAACTATTTGCCCGCCAAGCTGTTGGCACGCACATCACTCCTCCCTAGCAGCATCAAGCAGAAGTGTAAGTTCCTGCAGCTACAGGCAATCCAATCAGAGCTGACTCAGTTCAAGTTCAACATTGATGCGCTGCTCGGCCGAGTGGAACAGATCACAGAAGACAAACACTTTACTACAACTTTACAAAGAGCACTCTTTATCAGGGTGGAGTCAACAAAAGACCCAGGCCCTGTAAAGGGTAGCCCGTTGGTTTCTGCAGATAATCATTCCAGCTTCACAGTGGTGAGGGGGCAACATGCTGGCTTTAGGGGACCTAAACCCCAGACAACGCAGCAAACTGCCGATACCCAGCAACTAACAAGCTTATCCCTCATCTTCGAGCCCCTGGCTGACCAGGGAGGCTGGTTGGCAGAGATCACTTCCCTGCTTTCCTACCAGTTCCTGGCAGCTACCCTTACGCAGGGATCTTCTGACACAAGTGTACCTGGTGATTTGCCACCCTCTCCCAGTAGCCATGGCCATCTGGGCATGGCCTGtgagaggaggaatgtgacagaCCTGACACTCAAGATCATTGACATGGACCCCTTTACATGCTCACTTTATGGAAACAAGTGGATCTACCTGAACGAGTGTGAGCTGGAGGGGCAGCTAGCTGTCACCTCAACAAGCGTTTAA

Function


NR:

description
RNA-binding protein Raly-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12895 RALY, HNRNPCL2; RNA-binding protein Raly

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036984423.1 True 1146 mRNA 0.52 9 30648989 30686105

Neighbor


gene id symbol gene type direction distance location
LOC110527646 asip coding downstream 37770 30604097 ~ 30611268 (-)
LOC110527645 NA coding downstream 55138 30585503 ~ 30593851 (-)
LOC110527641 LOC106582623 coding downstream 254198 30311282 ~ 30394791 (-)
LOC110527624 LOC106595982 coding downstream 522170 30121975 ~ 30126819 (-)
LOC110527614 NA coding downstream 529140 30114634 ~ 30119849 (-)
LOC118965351 NA coding upstream 211822 30897927 ~ 30912147 (-)
LOC110527649 myc coding upstream 263372 30949477 ~ 30953659 (-)
LOC110527650 ergi3 coding upstream 303754 30989859 ~ 31005163 (-)
LOC110527651 LOC106582630 coding upstream 341213 31027318 ~ 31037871 (-)
LOC110527652 pigu coding upstream 390782 31076887 ~ 31097917 (-)
G595917 LOC106582627 non-coding downstream 12970 30634500 ~ 30636019 (-)
G595918 NA non-coding downstream 15098 30633374 ~ 30633891 (-)
G595915 NA non-coding downstream 22275 30623484 ~ 30626714 (-)
G595899 NA non-coding downstream 52831 30595053 ~ 30596158 (-)
G595888 NA non-coding downstream 67958 30580817 ~ 30581031 (-)
G596105 NA non-coding upstream 177545 30863650 ~ 30863858 (-)
G596115 NA non-coding upstream 181289 30867394 ~ 30867610 (-)
G596145 NA non-coding upstream 199864 30885969 ~ 30886210 (-)
G596146 NA non-coding upstream 200991 30887096 ~ 30887375 (-)
G596153 NA non-coding upstream 207964 30894069 ~ 30894305 (-)
G595364 NA other downstream 338055 30310171 ~ 30310934 (-)
G595022 NA other downstream 819424 29827953 ~ 29829565 (-)
G594968 LOC106591690 other downstream 921499 29721676 ~ 29727490 (-)
G594905 NA other downstream 1023090 29589993 ~ 29625899 (-)
G596094 NA other upstream 158076 30844181 ~ 30844624 (-)
G596039 NA other upstream 176752 30862857 ~ 30863320 (-)
G596352 NA other upstream 250060 30936165 ~ 30936614 (-)
G596433 NA other upstream 392407 31078512 ~ 31079318 (-)
G598354 NA other upstream 1732085 32418190 ~ 32420148 (-)

Expression



Co-expression Network