LOC110527649 (myc)


Basic Information

Item Value
gene id LOC110527649
gene name myc
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30949477 ~ 30953659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609062.2
AAATGGGTCTCGCTGCCACACCTACGGATCTTGTATACTATGGTAGATAACGGGGCGCCAGCAGATGTGCAGTTCATTTACAGACGGCAGAATAATTACAGTAGTTTATCTTGTTGGAATTTATCAAGACACGAAAACGTCTTCTTCCCTTTCTCGTACCCCTGAAATAATAAAGaTTCTGCCAGAATGCTGCAGAGTTTCTCCCAGTCACTAGACTGGTTCTACTCGGAGCCTCTCTTGTTTGATGATGAATTCTGCCAGAGCTTGATGAAGGACCTACAGTCGCTCCCCACGCCACCCCAGTCCCCTCCATTGAAGACTGGACTCCATGCCAAACCACTTTCCAAGGAGGACCAGTTGAGCTACGTCTCAGACATACTCCTGGAGGATCAGGACCCACAACTAAATTGGAATTGTGACTTTTTGTACGATGGCGGTGCAACCGAGACAAAGGACCAACAGCCAGATGAGTCCGACGACTGTTTATGGCATTGCCTCGGTGATAAGTCTATGGAGAAGCTATCATCTGTGCTCTCCAGCAGCCCGCTGCTCTCGGACATAGACACAAGTATTTTCGAGGAAATTGCCGGCTCCACACTGGATTGCCACAGCGTGGCGCTCGCATGCCAAGCTTTGGAGAATGAGGATTTACTATTGGACAGTCAGGAGCAAGGCAGCGAGTCGACTTCAGACTACGGCTCAGCAGGAGGTGAATTCTCAACGTATTCGAGCAGTGCCAGTGATTCTGaggaggagatagaCGTGGTGACAGTGAAGAGGACCACCAGCTCCTCACTCTCCCAGTCGGTAGAAGAGAGCCGGCGGCGACAGCGCGCCCTAAAGCGGCAACACCTGGAGATCCAGCTGCAGCACAACTACGCCGCCCCCTGCCCTGCATCGCCCCTCCACTCAGAGCCCTCGTCCACTTCCTACCACAAGCGCACCCGGTCCTCCGACTCCCACAGACACCACCATCACAGCTCGTCGGGCCGCTCGTCGCGACACAACCTCAGCAGTCAACAACACCAGTCTAGCTCTAGGCAGTCGACTgatgtggaggatgaggaggagaggaggcatacCCACAACGTGATGGAGAGGCAACGGCGCAACGAGCTGAAGAACTGTTTCCTGCGGCTCAGGGACAACGTGCCTGAGCTGTCCAACAACGACAAGGCCTCCAAGGTGGTCATCCTGAAGAGGGCGTGCGACAGCATCCGTGGCCTGGAGCTGGCGGGCCAGAGACTAAATGACAAGCGAGACAAGCTCCGAGAGAGGCAGGAGCAGCTCAAAGTTAAACTGGAGCAGCTCAGGAGGCAATGGTGTGACTGACGAGATGAGGCACAAAACTAAATCGTTTAGAGATGATTTGAAAATACTGGTCTTGACTTAAGACTTGATGCTGCGCACACTCAATGCATGGTCTCATCCATCCACGGTGGTGACTGTTTAAGAAGTGAAAGTTGCTGAGAGACGGTTAACCCGTATCAGTAAAAAAAGTTTGGTTTGGAACAACAGGTCCATGTTCAGCCTAGTACAATAATGTTAGTCATTTATTGTCCTAGCGATTTGCCAAAGTCATTGTTCATAAAATAGACTATGTAACCAATGTTACATAGACCAACCATATACATCTATGTTGTAGAGTAAGCTATATCAAATCGAGCAGCCATTTTGTTAGTGAAAAATGGACCTTGTGTATATACAGTCTCTTCCACATTCCCCATATGTTATGAAATTCCCACTGGGTAGAActgtctattccatgttggttcagcattgaaatgacatggaaacaacattgattcatcCAGTAGTTtggttttttgttttgtttttttgggcTGGATCCAAAGTTTAAAAATTTAAGGGGTTGAAGTAATGTATGCCAATTATTGCCATTAATTACTAAAACTGTTAATTACTACTTCCATTTACTCACGTGAACTTTAAAGACCTGACCTGTTAAGAATTTGGTGTGTTATTGTGGAACAATGCCTCATGCCTTAACTCATTCTGTTATGTTTTGTTAAAAGCATGATTACTGTACTCTACCTCAAACAGGTCTGAAACCTGAGAATTTGTTTGCTCTCTTGGAAGCAACTATATATAGATTTAGTTGTATATATTTTGGTTTTATTGTATCATaaattattttagtatttttttgggggtggggggttcaTTTGCAAGTTAAAGTTCTGTTTATCAGCAGCACTTTGTTTTTTATAATGTAATAAAGAATGGACAAAAGTCAA

Function

symbol description
myc Enables several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; eukaryotic initiation factor eIF2 binding activity; and transcription cis-regulatory region binding activity. Involved in several processes, including positive regulation of macromolecule metabolic process; regulation of fibroblast proliferation; and regulation of nucleobase-containing compound metabolic process. Acts upstream of or within positive regulation of cell population proliferation and regulation of gene expression. Located in chromatin; nucleus; and rough endoplasmic reticulum. Part of protein-containing complex. Implicated in several diseases, including demyelinating disease; hematologic cancer (multiple); lung adenocarcinoma; prostate cancer (multiple); and urinary bladder cancer. Biomarker of several diseases, including hepatitis C; leukemia (multiple); liver disease (multiple); polycystic kidney disease 1; and urinary system cancer (multiple).

NR:

description
transcriptional regulator Myc-2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609062.2 True 2258 mRNA 0.46 3 30949477 30953659

Neighbor

gene id symbol gene type direction distance location
LOC118965351 NA coding downstream 37330 30897927 ~ 30912147 (-)
LOC110528941 LOC103372673 coding downstream 263372 30648989 ~ 30686105 (-)
LOC110527646 asip coding downstream 338258 30604097 ~ 30611268 (-)
LOC110527645 NA coding downstream 355626 30585503 ~ 30593851 (-)
LOC110527641 LOC106582623 coding downstream 554686 30311282 ~ 30394791 (-)
LOC110527650 ergi3 coding upstream 36200 30989859 ~ 31005163 (-)
LOC110527651 LOC106582630 coding upstream 73659 31027318 ~ 31037871 (-)
LOC110527652 pigu coding upstream 123228 31076887 ~ 31097917 (-)
LOC110527654 LOC106582632 coding upstream 1122223 32075882 ~ 32174536 (-)
bc10 bc10 coding upstream 1307511 32261170 ~ 32266645 (-)
G596356 NA non-coding downstream 8096 30941079 ~ 30941381 (-)
G596354 NA non-coding downstream 10332 30938944 ~ 30939145 (-)
G596349 NA non-coding downstream 15629 30933604 ~ 30933848 (-)
G596335 NA non-coding downstream 25739 30923457 ~ 30923738 (-)
G596441 NA non-coding upstream 145352 31099011 ~ 31107231 (-)
G596471 NA non-coding upstream 185814 31139473 ~ 31139786 (-)
G596495 NA non-coding upstream 204887 31158546 ~ 31158821 (-)
G597314 NA non-coding upstream 619526 31573185 ~ 31573437 (-)
G596352 NA other downstream 12863 30936165 ~ 30936614 (-)
G596039 NA other downstream 86157 30862857 ~ 30863320 (-)
G596094 NA other downstream 104853 30844181 ~ 30844624 (-)
G595364 NA other downstream 638543 30310171 ~ 30310934 (-)
G596433 NA other upstream 124853 31078512 ~ 31079318 (-)
G598354 NA other upstream 1464531 32418190 ~ 32420148 (-)
G599058 NA other upstream 2284388 33237359 ~ 33239795 (-)
G599788 NA other upstream 2722420 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 2816391 33770050 ~ 33774908 (-)

Expression


Co-expression Network