LOC110527650 (ergi3)


Basic Information

Item Value
gene id LOC110527650
gene name ergi3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 30989859 ~ 31005163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609063.2
CGTATGCCTTGTGTACCGGAAGTAAATGTTGAGAACTGATGTGAATTATTTCAGCCCACGGTGTGAAAGAAGATGGACACACTACATAAACTAAAACAATTTGATGCCTATCCGAAAACTCTTGAGGATTTCCGAATTAAAACATGTGGCGGAGCTACGGTCACCATCATAAGTGGTCTCATCATGTTGATCCTGTTCTTCTCAGAGTTGCAGTATTATCTCACTAAGGAGGTCCATCCTGAATTGTTTGTGGACACATCACGAGGAGACAAACTGAAAATCAACATTAATGTGATATTTCCTAACATGCCGTGTGCCTATCTCAGCATTGATGCCATGGATGTTGCTGGAGAGCAGCAGTTGGATGTGGAACACAACCTGTTCAAGCAAAGGCTTGACAAGGATGGCAATTCTGTCACTACAGAAGCAGAGAAACATGATTTGGGACAAGAGGAAGGTGAAATTTTTGACCCTAGTAAGCTAGATCCTGAGCGGTGTGAAAGCTGCTATGGAGCAGAGACAGAGGATTTGAAGTGCTGTAACACCTGTGATGACGTACGGGAAGCGTATCGCAGGCGTGGCTGGGCCTTCAAGAACCCTGACACCATCGAGCAGTGCAAGAGGGAGGGCTTCAGCCAGAAGATGCAGGAGCAGAAGAATGAGGGCTGCCAGATCTATGGCTTTCTTGAGGTCAACAAGGTGGCAGGAAATTTCCACTTTGCCCCTGGAAAGAGTTTCCAGCAGTCCCATGTTCATGTGCACGCTGTGGAAATTCATGATCTGCAGAGCTTTGGACTAGATAACATCAACATGACTCACTTGATCAAACATCTATCCTTTGGGAGGGATTACCCTGGTATCGTCAATCCTTTGGATGGCACCGATGTTGCGGCACCACAAGCTTCCATGATGTATCAGTACTTTGTGAAGATTGTCCCAACCATCTATGTGAAATGGGATGGAGAGGTGGTTAAAACAAACCAATTCTCTGTAACGCGACATGAGAAAGTAGCCAATGGGTTGATCGGAGACCAGGGCCTACCTGGAGTGTTTGTATTATATGAACTCTCCCCTATGATGGTCAAAttcacagagaaacagagATCATTCACTCATTTTCTTACAGGACTGTGTGCCATCGTAGGAGGTGTATTTACAGTGGCTGGACTAATTGATTCCTTGATATACCACTCGGCAAAAGccatccagaagaagattgaacTGGGCAAGGCATCTTAGTGGAGTGTTTTGCACAAGGGCAAACCAGACTGTTCATCATTCTCCGGAAGGGCCTATCTGTAAAAGGGAAGTGACTACAAACTGATGCTAACTAACATGGCAATAAACAAAATCAGAATAATCTCCCTCAATATTGGAAGGAAATTTGACCGCTAAGTCTCCCATTTagttatttttgtttttacatcCCTTATCCATACAAAGAATGAAAGACCAAATCACTGGACAGAAGAGTGATTTAACAGATGTTTTTGATCACATTTGATTCATCCCCAGTCCAAGCACATTGTATCTATTAGTTGCTTCCCATATACACGtaacaaatataaacacaacatggaacaatttcaaagattgtaCTGATTTACAGTACATATAAGGAAAAGTCAAtcaaaaataaattcattaggcgctaatctggatttcacatgactgggaatactgaTATGCATCTGGTCAGAGATACcttaaaggtaggggcgtggatcagaaccagtcagtatatggtgtgaccaccatttgcatcaTGTAGAGCAACATCtctttcgcatagagttgatcaagctgttgattgcAGTCcgaggaatgttgtcccactcctcttcaatagctatgcaaagttactggatattcgcaggaactggaacacgctgtcttaaACCTTGATCCAGGGCATCCCAAACGGGCacaacgggtgacatgtctgagtgcaggccatggaagaactgggacatgttcagcttccaggaattgtgtacagatccttgtgacatggggctgtgcattatcatgctgaaacaggagtgacaatggacctcaggatcttgtcatgaCATTCAACTTGCCATCGGTGAGAAAAAAGAAGAAACCTGCGCAATgttcttgctagtatcactgctctttattaagcttTATGTATCAGCCTCAAGGTCTTCATCACTGCTTTAAAAAGCAGTTGTGttagttgtctgtagcttatgcctgccgaaaccataaccccaccgccaccatggggcactcagcaaaccactcaccgaCATAACGGCATACACGCTGTCtgacatctgcccggtacagttgaaatcgggattcatccatgaagagcacacttctccagcgtgccagtggccactgaagtcagttacaacgccaaactgcagtcaggtcaagaccgtGGTGAGGATGACacgcatgcagatgagcttccctgagacggtttccgacagtttgtgcagaaattcttcggttgtgcaaacctacagtttcattagctgtctgggctgctggtctcagacgattccacaggtgaagaagctggatgtggaggtcctgggctggcgtggttgcgAGGCCGGTCGgatatactgccaaattctctaaaacatgaactttacatttttttggcaactgctctggtggacattcctgcagtcatcatgccaattgcacactccctcaacttgagagaTCTGTGGTTTtgtataatgtaacaaaattgcacattttaagTGGCCTTTAATTTTCCCCAGCACACgttgtacctgtgtaatgatcatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggatattatcttggcaaaggagaaatgctcaaacAGTGACataaaccaatttgtgcacaacatttgagagaaataagctttttgtcctTATTTCTGGGATattgtatttcagctcatgaaacatgggaccaacactttacatgttgcgcttatttttgttcagtgtatatacctTTTTTGCCATTCTCATCTACCCTAAATGTACTGTCATGGACATGTTTATCCCATCCTTTTAATTTCTAATCTCTTTGATCAATCATGGACCcttcatttacataattatttgcTATGACATTGGACCCGAGCAGGTTGAATGTGTTTTTTAATGTGTGTtcaagggtgtattcattagtgcaaaaAGTTTTGCTATAGAAGACTTTTTGCAACTGAAATGAGTCTTATTTGAAAATTTATTTAGGTCACTCCAAGTTGTctcgtttggttcctagtgaatacaccccagattGATGGAATCTCTGACCGTCGTTGAGAGGACTACTTAAGGAGACCAAATGATGCAGTTTATTGTTCTTTTGTTGTGATTGCACATTTTGAGATCCAATTCAGGGGCCTGTGTTGAGTGAAAGTGTGTGGGgttgagagaaagtgtgtgtgtgagcgcatgtGTACagcttattgtgtgtgtgtgggagagacgTATTTATATTTTGAGAATCTTCAATGTTTTTTAAAATGACAAATAAATGTTGAATACACCAGCCTGTAATGTA
>XM_021609064.2
CGTATGCCTTGTGTACCGGAAGTAAATGTTGAGAACTGATGTGAATTATTTCAGCCCACGGTGTGAAAGAAGATGGACACACTACATAAACTAAAACAATTTGATGCCTATCCGAAAACTCTTGAGGATTTCCGAATTAAAACATGTGGCGGAGCTACGGTCACCATCATAAGTGGTCTCATCATGTTGATCCTGTTCTTCTCAGAGTTGCAGTATTATCTCACTAAGGAGGTCCATCCTGAATTGTTTGTGGACACATCACGAGGAGACAAACTGAAAATCAACATTAATGTGATATTTCCTAACATGCCGTGTGCCTATCTCAGCATTGATGCCATGGATGTTGCTGGAGAGCAGCAGTTGGATGTGGAACACAACCTGTTCAAGCAAAGGCTTGACAAGGATGGCAATTCTGTCACTACAGAAGCAGAGAAACATGATTTGGGACAAGAGGAAGGTGAAATTTTTGACCCTAGTAAGCTAGATCCTGAGCGGTGTGAAAGCTGCTATGGAGCAGAGACAGAGGATTTGAAGTGCTGTAACACCTGTGATGACGTACGGGAAGCGTATCGCAGGCGTGGCTGGGCCTTCAAGAACCCTGACACCATCGAGCAGTGCAAGAGGGAGGGCTTCAGCCAGAAGATGCAGGAGCAGAAGAATGAGGGCTGCCAGATCTATGGCTTTCTTGAGGTCAACAAGGTGGCAGGAAATTTCCACTTTGCCCCTGGAAAGAGTTTCCAGCAGTCCCATGTTCATGTTCATGATCTGCAGAGCTTTGGACTAGATAACATCAACATGACTCACTTGATCAAACATCTATCCTTTGGGAGGGATTACCCTGGTATCGTCAATCCTTTGGATGGCACCGATGTTGCGGCACCACAAGCTTCCATGATGTATCAGTACTTTGTGAAGATTGTCCCAACCATCTATGTGAAATGGGATGGAGAGGTGGTTAAAACAAACCAATTCTCTGTAACGCGACATGAGAAAGTAGCCAATGGGTTGATCGGAGACCAGGGCCTACCTGGAGTGTTTGTATTATATGAACTCTCCCCTATGATGGTCAAAttcacagagaaacagagATCATTCACTCATTTTCTTACAGGACTGTGTGCCATCGTAGGAGGTGTATTTACAGTGGCTGGACTAATTGATTCCTTGATATACCACTCGGCAAAAGccatccagaagaagattgaacTGGGCAAGGCATCTTAGTGGAGTGTTTTGCACAAGGGCAAACCAGACTGTTCATCATTCTCCGGAAGGGCCTATCTGTAAAAGGGAAGTGACTACAAACTGATGCTAACTAACATGGCAATAAACAAAATCAGAATAATCTCCCTCAATATTGGAAGGAAATTTGACCGCTAAGTCTCCCATTTagttatttttgtttttacatcCCTTATCCATACAAAGAATGAAAGACCAAATCACTGGACAGAAGAGTGATTTAACAGATGTTTTTGATCACATTTGATTCATCCCCAGTCCAAGCACATTGTATCTATTAGTTGCTTCCCATATACACGtaacaaatataaacacaacatggaacaatttcaaa

Function

NR:

description
endoplasmic reticulum-Golgi intermediate compartment protein 3-like isoform X2

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20367 ERGIC3, ERV46; endoplasmic reticulum-Golgi intermediate compartment protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609063.2 False 3570 mRNA 0.43 14 30989859 31005163
XM_021609064.2 True 1576 mRNA 0.43 13 30991838 31005163

Neighbor

gene id symbol gene type direction distance location
LOC110527649 myc coding downstream 36200 30949477 ~ 30953659 (-)
LOC118965351 NA coding downstream 77712 30897927 ~ 30912147 (-)
LOC110528941 LOC103372673 coding downstream 303754 30648989 ~ 30686105 (-)
LOC110527646 asip coding downstream 378640 30604097 ~ 30611268 (-)
LOC110527645 NA coding downstream 396008 30585503 ~ 30593851 (-)
LOC110527651 LOC106582630 coding upstream 22155 31027318 ~ 31037871 (-)
LOC110527652 pigu coding upstream 71724 31076887 ~ 31097917 (-)
LOC110527654 LOC106582632 coding upstream 1070719 32075882 ~ 32174536 (-)
bc10 bc10 coding upstream 1256007 32261170 ~ 32266645 (-)
LOC110527655 tmem74b coding upstream 1283001 32288164 ~ 32293251 (-)
G596356 NA non-coding downstream 48478 30941079 ~ 30941381 (-)
G596354 NA non-coding downstream 50714 30938944 ~ 30939145 (-)
G596349 NA non-coding downstream 56011 30933604 ~ 30933848 (-)
G596335 NA non-coding downstream 66121 30923457 ~ 30923738 (-)
G596441 NA non-coding upstream 93848 31099011 ~ 31107231 (-)
G596471 NA non-coding upstream 134310 31139473 ~ 31139786 (-)
G596495 NA non-coding upstream 153383 31158546 ~ 31158821 (-)
G597314 NA non-coding upstream 568022 31573185 ~ 31573437 (-)
G596352 NA other downstream 53245 30936165 ~ 30936614 (-)
G596039 NA other downstream 126539 30862857 ~ 30863320 (-)
G596094 NA other downstream 145235 30844181 ~ 30844624 (-)
G595364 NA other downstream 678925 30310171 ~ 30310934 (-)
G596433 NA other upstream 73349 31078512 ~ 31079318 (-)
G598354 NA other upstream 1413027 32418190 ~ 32420148 (-)
G599058 NA other upstream 2232884 33237359 ~ 33239795 (-)
G599788 NA other upstream 2670916 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 2764887 33770050 ~ 33774908 (-)

Expression


Co-expression Network