LOC110527651 (LOC106582630)


Basic Information

Item Value
gene id LOC110527651
gene name LOC106582630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 31027318 ~ 31037871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609065.2
GCAACGCAATTTCTGACGTAATTGTGGCTGGCTTCACATAAATTGGCGTTCCGCTGTCTTTCGAGGCAGGAAGATGGCGGCGCTACGAGTGGTCGTGCTGTCGGGGACTGGAAGAGCCCTACTATGCACGCCAAAAACGATCAAGGCCCCTCGGGTCAACATGTCGTTTGCCAGTCTACCCAGGTCAAAGAAGGTGGCCCTGACAATGTTTGGTGTGTTGACAACCAGTGGGGCCGGGATTGCTCTGATGCTACAGCAGTCTGTTAAGGCCTCAGACCTGGAGCTCCACCCCCCCAACTACCCCTGGACCCACAGCGGCATGTTGTCAGCCCTTGACCACGGCAGCATCCGTCGTGGATATCAGGTGTACAAGCAAGTGTGTTCAGCGTGTCACAGCATGGAGTACCTGGCCTTCCGTAACTTGGTTGGAGTGTCGCACACAGAGGCCGAAGTTAAGGTTCTGGCTGAGGAGATTGAGGTGGTGGATGGCCCTGACGAGTCGGGGGAGATGTTTACCCGTCCAGGAAAGCTCTCCGACTACTTCCCCAAGCCATACCCCAACCCAGAGGCTGCCCGTGCGGCCAACGGCGGAGCCTTGCCACCAGATCTCAGCTACATCGTCAATGCCAGACATGGAGGTGAAGACTATGTATTCTCCCTGCTGACGGGTTACTGTGAGCCCCCTGCTGGAGTGGAGGTGAGAGAGGGCCTCTACTACAACCCCTACTTTCCAGGCCAGGCCATCGGCATGGCTCCCCCTATCTACAATGAGGTCCTGGAATTCGAGGACGGAACCCCAGCCACCATGAGCCAGGTGGCCAAGGATGTGTGCACCTTCCTCCGGTGGGCAGCCGAGCCTGAGCACGACCAGCGCAAACGCATGGGCCTGAAGCTGCTCATGGGTTCCGCCATCTTGGTCCCTCTGGTCTATTACATGAAGAGGCACAGGTGGTCTGTGCTGAAGAGCAGGAAGATTGCTTACAGGCCCCCCAAGTAAAGACCTGGACAGCTGCATTCTGCCTGCCCATGTGGCTGCTCGGCTCGAACTCTGACCCCTCTGATTTGCAATTGTCCATCtttaataaatttaaaaaaacctCACATGCATTTAAGATATGGTTGCCCTAATTCACTTTTCAAAAAAGAGATTCTCTGCCAAAAGGGAAGGATGTAAACACAACCTCAACTTGTTTTGAACTGTAATCAAACGAAACGTGTCCAGGTTGTGGTcaagtgtttcccaactccagtaaccccaacggcacacattttttggggggaaacaCTTGTATAGTGGCTAACCAGTTCTTCTGAGGGGATTCTCAACCGGAGTCATTGTATGTTCCTGCAACCATCTTGTGCTGTTGTGAATCTGTCACGTTATAGGTTCTCTACACTTTGGTGTGTAAATATTTAATAAACACTGGTGTACTGAATAAACAAACCCATGTTTTAATCCGA

Function

NR:

description
cytochrome c1, heme protein, mitochondrial-like

GO: NA

KEGG:

id description
K00413 CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609065.2 True 1461 mRNA 0.52 7 31027318 31037871

Neighbor

gene id symbol gene type direction distance location
LOC110527650 ergi3 coding downstream 22155 30989859 ~ 31005163 (-)
LOC110527649 myc coding downstream 73659 30949477 ~ 30953659 (-)
LOC118965351 NA coding downstream 115171 30897927 ~ 30912147 (-)
LOC110528941 LOC103372673 coding downstream 341213 30648989 ~ 30686105 (-)
LOC110527646 asip coding downstream 416099 30604097 ~ 30611268 (-)
LOC110527652 pigu coding upstream 39016 31076887 ~ 31097917 (-)
LOC110527654 LOC106582632 coding upstream 1038011 32075882 ~ 32174536 (-)
bc10 bc10 coding upstream 1223299 32261170 ~ 32266645 (-)
LOC110527655 tmem74b coding upstream 1250293 32288164 ~ 32293251 (-)
psmf1 psmf1 coding upstream 1267940 32305811 ~ 32323158 (-)
G596356 NA non-coding downstream 85937 30941079 ~ 30941381 (-)
G596354 NA non-coding downstream 88173 30938944 ~ 30939145 (-)
G596349 NA non-coding downstream 93470 30933604 ~ 30933848 (-)
G596335 NA non-coding downstream 103580 30923457 ~ 30923738 (-)
G596441 NA non-coding upstream 61140 31099011 ~ 31107231 (-)
G596471 NA non-coding upstream 101602 31139473 ~ 31139786 (-)
G596495 NA non-coding upstream 120675 31158546 ~ 31158821 (-)
G597314 NA non-coding upstream 535314 31573185 ~ 31573437 (-)
G596352 NA other downstream 90704 30936165 ~ 30936614 (-)
G596039 NA other downstream 163998 30862857 ~ 30863320 (-)
G596094 NA other downstream 182694 30844181 ~ 30844624 (-)
G595364 NA other downstream 716384 30310171 ~ 30310934 (-)
G596433 NA other upstream 40641 31078512 ~ 31079318 (-)
G598354 NA other upstream 1380319 32418190 ~ 32420148 (-)
G599058 NA other upstream 2200176 33237359 ~ 33239795 (-)
G599788 NA other upstream 2638208 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 2732179 33770050 ~ 33774908 (-)

Expression


Co-expression Network