LOC110527652 (pigu)


Basic Information

Item Value
gene id LOC110527652
gene name pigu
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 31076887 ~ 31097917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609066.2
AAATTCTGTGACCCCGGACTTACTTTGTTAGTGTTGCTGACGAGCCGCTGATGGCTTCTTCCTCCCAACAAAGATGGCAGCTCCTTTAACCCTGCTTTTAATTGTAGCTGTAACAATAAGAGCAGTGTTATTTAGATCAAGTTTAGCTGAGCTAATACCAGAAAGAGTTGAGGTAGTATCTCCACTAAATGCCTGGAAAAGAGTTGTGGAAGGCCTGGCTCTCCTGGACCTGGGAGTATCTCCGTATGCAGGGGATGTGTTCCATGAGACGCCCCTCATTATATATTTCTTTCACTTTGTTAGTGATTATGCAGAGATTGTGTTTATGATGGCAGATGCACTCACTGCGGTGGCACTATACCTAGCAgtgaaggactacaacaagaCTGTGTTCAGGAAACAGAAGTATGCCCTGGAGGCTGAGCGCTATCCTCTGGACTGCCTGGAGCTCATCCGCACCCCCAAAGAGATGTACTACATCCCTCTGAAAGTGGCCATGTTTTACTTGTTGAACCCTTTCACTATCCTCTCCTGTGTGGCAAAGTCAACCTGCGGGCTTAACAATGCAGTCATCGCACTCTTCATTCTCTGTACAGTAAAAGGAAGTTCCTTGATGAGTGCGATATTCTTGGCCTTGGCGACATACCAGTCAATCTACCCCCTCACACTATTTGCCCCGGCACTGCTATACCTACTACAGAGGTTGTACATCCCAGTGAACTGGCAAAGATCCAGCTTCTGGCTCTTCACAACGCAGTACACCTTCATGTACTTGGGCAGCCTATGTGTCatggtctgtctgtccttcttCCTGCTCAGCTCCTGGGACTTCCTGTCTTCCGTCTATGGATTCATCCTCTCCGTTCCAGACCTCACCCCCAACATAGGCCTCTTCTGGTACTTCTTTGCCGAGATGTTTGAGCACTTCCGCCTCTTCTTCATCTGCGTCTTTCAGATCAACGTGTTCTTCTACACCATTCCACTCTCCATCAAGCTAAAggAGCACCCGATCTTTCTGATCTTCATGCAGATTGCCATCATCTCCATCTTCAAGTCCTACCCCACCGTGGGCGACATCGCCCTCTACATGGCCTTCCTGCCTGCATGGAACCACCTATACAGATTCTTGAGAAATATATTTCTGGTGTCGGTTGTGTTGTTGGCTTGCTCCACCTTGTTCCCCGTCCTCTGGCACCTCTGGATCTACGCTGGCAGCGCCAACTCCAACTTCTACTACGCCATCACACTGCTCTTCAATGTGGCACAGATCTTGCTGGTGTCGGACTACTTCTATGCGTACCTGCGGCGAGAGCACCACCTGACCCATGGCTTGTACCTGAAGAGGAAAGACGGCAGCGAGGCCACTCTGGTTCTCAAGTAGACGTCAAACTCTCACACGCACGCAGGCAGGGATGGGACATGGGTGACAGACCCATACCTGACTGTCAGTGACACTGAACATTACCCCACCCTTTGAGTTCTTATTTCTGAGGTCTTACGTTTAAGCAAACATCTACCcacccaaccaaccaaccaaccacctgCCACCCCCATAGACCAAAGCCATAGTGTATCTGAAGTTACTTCTGGTACAGAAATTATGGATGGAGCAGACATGGAGTTGAAGAGGGTGGGATGGAAGATGGATGCCTTTTGCTCTTTCCATGCTCTGTCGCTCCAGTGAGTAGGTGACAAATCTTGTTGTGGCGGGTAGGTGATGATGTTGCTTGTCCTTTTCTTTTGCTTAATTTGGTCATAGTTTTTTTCCTGGATTTCCTTTCTTATGCTTTTAGGAATTGCTGTCACTCATTGAAAACAAGCACATGACTTGAGAGATGTGAGCCTTTGGGTACTTGGAGCACACAGGAACCAGACAGTTGTGCATTTAGGCTGTTTACCAGCAGAGGGCGTCGCTTGAACATGAAAAACACAGGGGCTTGTCAGTCAATCTAGTGTTTACTGGAAGAAACAGCCTCCAcatctgggtcgtgttcattagggcgcGCAACTGAAAATGTGTAAAACATATAATGCATTTCTTATTGTCCAAGTAGTTCACCTGTTCCATTATGTTGTCTTCTTGTTTAGTGCCTAATGAACAAAACCCTTTATTTTGTGTTTTACTAATACACTTAACACTTTGTCCTACAAAAACTGTGTACAACATGTTGGTAAGTTGGCACTCTTCTCTCAATGGATATCTGATGGGCCTAACTACTGCATTGTCACTATTTGCAATACTATAGTAAAAATATATCAGGATAAGACACCTGTTTACTGGAGTGTTATCTGAGAAAAATGTAGTCTGATAACCCTCTACCCAGTGAAAATTAGATATGATCTGGATTCCTCACTATCTGAACTCTCGTTGAACACTCTGCTTGTTGAATGTGATCCAGCATGAATGTTCATGTATGCCATTTTTATgtgtacatatacagtatttatttgaCAGCACTAATTTTGTTCAACATTTTTCTTCTATAATTTTATAATTGTTTTGATATGTTTCTGTATTTGTTTTTTCTTCATGATATTAAAGACCAGGGTGATTTTAAAA
>TU679683
gagttcctgggctggcgtggttacacgtggttgtgaggctggttggacgtgctgccaaattctctaaaacgacgttggtggagaaattaacattacattttatggcaaccgctctggtggacattcctgctTCTTGAGAAATATATTTCTGGTGTCGGTTGTGTTGTTGGCTTGCTCCACCTTGTTCCCCGTCCTCTGGCACCTCTGGATCTACGCTGGCAGCGCCAACTCCAACTTCTACTACGCCATCACACTGCTCTTCAATGTGGCACAGATCTTGCTGGTGTCGGACTACTTCTATGCGTACCTGCGGCGAGAGCACCACCTGACCCATGGCTTGTACCTGAAGAGGAAAGACGGCAGCGAGGCCACTCTGGTTCTCAAGTAGACGTCAAACTCTCACACGCACGCAGGCAGGGATGGGACATGGGTGACAGACCCATACCTGACTGTCAGTGACACTGAACATTACCCCACCCTTTGAGTTCTTATTTCTGAGGTCTTACGTTTAAGCAAACATCTACCcacccaaccaaccaaccaaccacctgCCACCCCCATAGACCAAAGCCATAGTGTATCTGAAGTTACTTCTGGTACAGAAATTATGGATGGAGCAGACATGGAGTTGAAGAGGGTGGGATGGAAGATGGATGCCTTTTGCTCTTTCCATGCTCTGTCGCTCCAGTGAGTAGGTGACAAATCTTGTTGTGGCGGGTAGGTGATGATGTTGCTTGTCCTTTTCTTTTGCTTAATTTGGTCATAGTTTTTTTCCTGGATTTCCTTTCTTATGCTTTTAGGAATTGCTGTCACTCATTGAAAACAAGCACATGACTTGAGAGATGTGAGCCTTTGGGTACTTGGAGCACACAGGAACCAGACAGTTGTGCATTTAGGCTGTTTACCAGCAGAGGGCGTCGCTTGAACATGAAAAACACAGGGGCTTGTCAGTCAATCTAGTGTTTACTGGAAGAAACAGCCTCCAcatctgggtcgtgttcattagggcgcGCAACTGAAAATGTGTAAAACATATAATGCATTTCTTATTGTCCAAGTAGTTCACCTGTTCCATTATGTTGTCTTCTTGTTTAGTGCCTAATGAACAAAACCCTTTATTTTGTGTTTTACTAATACACTTAACACTTTGTCCTACAAAAACTGTGTACAACATGTTGGTAAGTTGGCACTCTTCTCTCAATGGATATCTGATGGGCCTAACTACTGCATTGTCACTATTTGCAATACTATAGTAAAAATATATCAGGATAAGACACCTGTTTACTGGAGTGTTATCTGAGAAAAATGTAGTCTGATAACCCTCTACCCAGTGAAAATTAGATATGATCTGGATTCCTCACTATCTGAACTCTCGTTGAACACTCTGCTTGTTGAATGTGATCCAGCATGAATGTTCATGTATGCCATTTTTATgtgtacatatacagtatttatttgaCAGCACTAATTTTGTTCAACATTTTTCTTCTATAATTTTATAATTGTTTTGATATGTTTCTGTATTTGTTTTTTCTTCATGATATTAAAGACCAGGG

Function

symbol description
pigu Enables GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGU (phosphatidylinositol glycan anchor biosynthesis class U).

NR:

description
Phosphatidylinositol glycan anchor biosynthesis class U protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609066.2 False 2560 mRNA 0.45 12 31076887 31097917
TU679683 True 1556 lncRNA 0.43 3 31076898 31081848

Neighbor

gene id symbol gene type direction distance location
LOC110527651 LOC106582630 coding downstream 39016 31027318 ~ 31037871 (-)
LOC110527650 ergi3 coding downstream 71724 30989859 ~ 31005163 (-)
LOC110527649 myc coding downstream 123228 30949477 ~ 30953659 (-)
LOC118965351 NA coding downstream 164740 30897927 ~ 30912147 (-)
LOC110528941 LOC103372673 coding downstream 390782 30648989 ~ 30686105 (-)
LOC110527654 LOC106582632 coding upstream 977965 32075882 ~ 32174536 (-)
bc10 bc10 coding upstream 1163253 32261170 ~ 32266645 (-)
LOC110527655 tmem74b coding upstream 1190247 32288164 ~ 32293251 (-)
psmf1 psmf1 coding upstream 1207894 32305811 ~ 32323158 (-)
si:ch211-15p9.2 LOC106582638 coding upstream 1323747 32421664 ~ 32424650 (-)
G596356 NA non-coding downstream 135506 30941079 ~ 30941381 (-)
G596354 NA non-coding downstream 137742 30938944 ~ 30939145 (-)
G596349 NA non-coding downstream 143039 30933604 ~ 30933848 (-)
G596335 NA non-coding downstream 153149 30923457 ~ 30923738 (-)
G596441 NA non-coding upstream 1094 31099011 ~ 31107231 (-)
G596471 NA non-coding upstream 41556 31139473 ~ 31139786 (-)
G596495 NA non-coding upstream 60629 31158546 ~ 31158821 (-)
G597314 NA non-coding upstream 475268 31573185 ~ 31573437 (-)
G597326 NA non-coding upstream 485875 31583792 ~ 31583995 (-)
G596352 NA other downstream 140273 30936165 ~ 30936614 (-)
G596039 NA other downstream 213567 30862857 ~ 30863320 (-)
G596094 NA other downstream 232263 30844181 ~ 30844624 (-)
LOC110527646 asip other downstream 465619 30604097 ~ 30611268 (-)
G595364 NA other downstream 765953 30310171 ~ 30310934 (-)
G598354 NA other upstream 1320273 32418190 ~ 32420148 (-)
G599058 NA other upstream 2140130 33237359 ~ 33239795 (-)
G599788 NA other upstream 2578162 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 2672133 33770050 ~ 33774908 (-)
G600721 NA other upstream 3516575 34614492 ~ 34614875 (-)

Expression


Co-expression Network