psmf1 (psmf1)


Basic Information

Item Value
gene id psmf1
gene name psmf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32305811 ~ 32323158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609072.2
AGAGATCGCGTTGTTCAGCCATTGAGATCGACCCAATGAGTAACATAAACAGCCGTGCCTCTCGCAAGTCTTTCGTTTTCGGTCAAACATTGCTATCGATTCATAACTTTCCGAAAGATGGCTGGTTTAGAGCTTTTGTACAGCTGCGTAGCAGGCAGTATTACCTGTCCACAAGACGTCGTTGTGTGTTTTGTTCACTGGGAAATTGTAAAGAGTGGGTACAAATGCCTTGGGTTAGGAGATGAGCCTCGGAGTGGTGACAAGAAGTCGGAGTTGCTTCCTACAGGGTGGAATGACAGCAAGGAATTGTACACCCTTCGGTACAAGTCAAATGATGACAAGTCTAATTTCTTGGTCAAAGCCATCACTGTGGATTCCACCTTGATCTTCAACTTAATGGACTCGGCCACTGAACAGGTGTCAGACCTGACAATGAATGTCAGTGATTATGTGGATGCAGATCATTTGCAGACATTTGAAAGTGTATTCAAGAATGCAGAAGATTTGTCTCAGAAGGTGAAGAGCCAGCTCCTTCCCTCAGTGCCTGCGCCAAGAAAGGAAGACAAGAGTAGCAGAGAGAAATCCAATGACTCCCAGCCGGACAGTGACCCTCTCCGCATTCCCACAAGGCATCCACAGACCAGTAGGCAGCCTAACTGGCCAGACCCCATGGCTCCTTTCGCTGCAGGTGGAGCCGATCTGGATCCCTTTGGTGGTCGTGGAGGAGGGATGATCGTGGACCCTTTGAGGGCTGGTTATCCCCGCTCAGGGTTTGACCCCTCTGGTGGGCTCCCTGGCATCCTGCCGCCAGGAGCTGTGCCACCCGGGGCCCGCTTTGACCCCTTTGGGCCTGTCGGAAGACACAGACCTGGGCCAGACCCAGATCACATGCCGCCGCCAGGCTATGATGACATGTTCATGTAGAAGAAAAGGCACTCCTCCGCTCCTCACACTTCCTGGACCACTTCCTGTCTCTAATGTGAGGAATACACACTTAGACAGGCTCTGGaattttgatatatatatatatatatatttaaaaaatacctcCCGCTTTGACACTTCCTGGCAGCTCAATGTGTAGTTTGTTCATGCATGATCTATGTGCAGAATTTGTTTTGCTTGAATTAGCaacgaaatccctagtttgaaagtaactgtttttctggaagctgtgcttTGTCATTTTCCCTCATGTGGGCCAGCCCCTTAGCAATTCGGTTtcaaccaatgagcttcagccctcGTCATGCAAGTGACCGCTAGCAAGATGCACAAACAGCAGAGTTAGAGAGAGCAATAACGTGGTGCACATAGGTGACACTACCTTCTGAACTACTGGcttaaaaagtatacaaaagtactggAGAATCCCTTTTAATAAAACTGTTTGACTAATTTGTTCAGTGTGAGGAATAAAGCTACtttgtacaatttttttttttttggggggggcttaTTTGGTGGGGTTCTAATTTAAACATTTTGGAGTTCATAGTCAAATGTTCAAGCAGCTAATATTTGTTCTGATTTTCAAATGCTGCTTGCAAAGACTGGCTTTTGCTGCTTGTGTCCACAAAAGTAAAATGTGAGAACCTGTCCAATTTGTTTTACAATCTAAGTCGTTCGGAAACACCTACAGCATTAGAACTTAATGATTGATCCAAGTTATGTCTGCTACTCAACTTAACATAATAGTTTGCTTTTACTGACATCTTATTCAAATGTTTTTCAGACTTCACTGGTTTATGTCCAGCAAAATGGTGTAATAAAATATTTATTACATTC

Function

symbol description
psmf1 Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in endoplasmic reticulum. Orthologous to human PSMF1 (proteasome inhibitor subunit 1).

NR:

description
proteasome inhibitor PI31 subunit

GO:

id name namespace
GO:0000502 proteasome complex cellular_component

KEGG:

id description
K06700 PSMF1; proteasome inhibitor subunit 1 (PI31)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609072.2 True 1788 mRNA 0.45 7 32305811 32323158

Neighbor

gene id symbol gene type direction distance location
LOC110527655 tmem74b coding downstream 12560 32288164 ~ 32293251 (-)
bc10 bc10 coding downstream 39166 32261170 ~ 32266645 (-)
LOC110527654 LOC106582632 coding downstream 131275 32075882 ~ 32174536 (-)
LOC110527652 pigu coding downstream 1207894 31076887 ~ 31097917 (-)
LOC110527651 LOC106582630 coding downstream 1267940 31027318 ~ 31037871 (-)
si:ch211-15p9.2 LOC106582638 coding upstream 98506 32421664 ~ 32424650 (-)
LOC118965410 NA coding upstream 220800 32543958 ~ 32544012 (-)
LOC110527664 LOC106582643 coding upstream 469022 32792180 ~ 32822397 (-)
LOC110527666 if6 coding upstream 575188 32898346 ~ 32913140 (-)
fam83c fam83c coding upstream 618748 32941906 ~ 32950746 (-)
G597665 NA non-coding downstream 263735 32041868 ~ 32042076 (-)
G597649 NA non-coding downstream 271132 32034417 ~ 32034679 (-)
G597647 NA non-coding downstream 272471 32032928 ~ 32033340 (-)
G597546 NA non-coding downstream 396174 31909145 ~ 31909637 (-)
G598356 NA non-coding upstream 92609 32415767 ~ 32416286 (-)
G598355 NA non-coding upstream 97163 32420321 ~ 32421072 (-)
G598394 NA non-coding upstream 110447 32433605 ~ 32433947 (-)
G598398 NA non-coding upstream 115461 32438619 ~ 32438825 (-)
G598409 NA non-coding upstream 128741 32451899 ~ 32452191 (-)
G596433 NA other downstream 1226493 31078512 ~ 31079318 (-)
G596352 NA other downstream 1369197 30936165 ~ 30936614 (-)
G596039 NA other downstream 1442491 30862857 ~ 30863320 (-)
G596094 NA other downstream 1461187 30844181 ~ 30844624 (-)
LOC110527646 asip other downstream 1694543 30604097 ~ 30611268 (-)
G598354 NA other upstream 95032 32418190 ~ 32420148 (-)
G599058 NA other upstream 914889 33237359 ~ 33239795 (-)
G599788 NA other upstream 1352921 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 1446892 33770050 ~ 33774908 (-)
G600721 NA other upstream 2291334 34614492 ~ 34614875 (-)

Expression


Co-expression Network