si:ch211-15p9.2 (LOC106582638)


Basic Information

Item Value
gene id si:ch211-15p9.2
gene name LOC106582638
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32421664 ~ 32424650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609077.2
TATACTCAAACCGATTCTTACAATTGAGAGCCTGTCTATAGTCACATTTTGGGGAGGAAATATCAGCTTCTGACAGCACATTATAATCATCCAAAACAGATTCATCCTACAATATATTAAGCATGGGAACAAAGTAGTCTACCCAAGTTAAAATATAACCTAACTGTTCTGTTCTCAAGAACTGCTCAGAGTAACTCATCGGCTACAGCAGGTGGCGTTTGAAAACTCCAAGTTCTAAAGATGGTACCTCCGCTTTGCTTTCAACACCTCAAACAATACTGGGCCATGTACAGGTTAAGACTGATAAGGAAAAGCTGCTTGACCCAAATTAAATTACTTGGCTTTGATACTAGACTGTGTCATTCTTCCAGACCTCCAGTAGATTTGATCGGTATCAACTACCCAGCAGAAACAATCAATGGGAGAAAATACAGAGACAACCATCAGACCAGTCAGATGCCTCTTTCTAAAATAAACCACATCTTAAAAGCTAATGAGTACAGTTATAAAGTCAATGGATATGATGGACGAAATTCTGTTAACTCAATTTTAGGGTTAGATAGTAACATCTTGGCATCAAATGCTCTGAATGAGGACCGCAGGAGTGCAGCGACTTGTCTCCAGAGTAAGGGAATGCTTTTGGGGGTTTTCGATGGACATGCAGGTTATGCGTGCGCCCAGGCAGTCAGTGAAAGGCTCTTCTACTACATTGCTGTGGCTCTACTCCCAGTGAAGACCTTAATGGACATTGAGGATGCAGTTGAGAATGAAAGGCCGGTGTTACCCATGCTACAGTGGCACAAGCACCCAAATGACCATACCAGCAGAGACTCTGGGAAGCTTTACTTCAACAGCCTTAGGACGTACTGGCAAGAGAGGATCGatctagaggaggatgaggacaggGACGTCCAAACGGCTTTGATGAATGCATTCAAGAGGTTGGACAATGACATTTCACTTGAGGCCCAGGTGGACTTTGGGGACCCCTTTTCCCACTTCACCCCTCTTCGGGTGGCTCTGTCAGGGTGCACAGCATGTGTCGTCCATGTGGATGGAGATGACCTGCATGTGGCCAACCTGGGGGATAGCAGGGCCGTGCTGGGAGTCCAAGAGGAGAACGGGACCTGGTCAGCACACACCATCAGTAACGACCACAATGCCCAAAACGCAGACGAGTTGCAGAGGGTTCTATCGGAGCACCCTGCGCTCGAACACAAGACGGTAGTCAAACACGACAGGCTACTGGGTCTTCTCATGCCCTTCAGAGGGTTCGGAGACATGAAGTTTAAATGGAGTGGTGAAATGTTGAACCGGGTGTATGAAACAAGATCAGACATCTTGTCGGCCAATGAGTTTAAGATGCTCCCACCTAACTACCACACCCCACCATATCTCATTGCTGAGCCAGAGGTGACAATCCACACACTGAGGCCAAAGGACAAGTTTCTGATCATGGCAACTGATGGACTATGGGAGCTGATGCACAGGCAAACTGTGGTGCAGGTCATAGGAGAACATCTGACTGGTCTACACTGGCAGAAACCTGTATCTGGGCTGTCTTTCACACTGGGACAGATGCACAGGTTGCTCCAGGAGAGGAAAAGCAGAGCCATTTTTGCTTTAGATGATGAGAACTCTGCAACACATCTGATCCGACATGCTTTAGGGAGTGATGGCTTTGGTACTGTGGACCCAAGGCGCTTGTCGAAAATGCTCAGCTTGCCTCAGGACCTGGCAAGGATGTACAGGGATGACATAACAATTGTTGTAATCCATTTAAATAGTGCCAACATGTAAGCCAATTAAAGATCAGACATTAAGGGGGATAAGGGGCTCTATTTTTGGCTGGCGCTAAGAATGGCGCTCTTGTCAAACTGGGGCTCTGACATTTTCCAAGAGAGATATTATGATGCCGGTGACCCTCATATTTtgaaatatttcagttgttttctGTTCTATTTGATTAGAAAGTCCTCTGTAGGCTTACCAACTATAACGAAGCCGAGTTCAACAGCAAGGCTTCATTGCGTCTTTTTTATCCTGGCTATGCATATGCCAAGCAGCCTAtcaagatttttttattttttactcgtGAGTGCAGTTTTGGAGGTTTAGACAATTTTCACACCTGCATAGCCTTCTTCATTTCGCGTGTTTCTGTATCTATCCCCattttcacatacagtgccttgcgaaagtattcggcgcccttgaactttgcgaccttttgccacatttcaggcttcaaacataaag

Function

NR:

description
pyruvate dehydrogenase [acetyl-transferring]-phosphatase 1, mitochondrial-like

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609077.2 True 2259 mRNA 0.46 2 32421664 32424650
Loading

Neighbor

gene id symbol gene type direction distance location
psmf1 psmf1 coding downstream 98506 32305811 ~ 32323158 (-)
LOC110527655 tmem74b coding downstream 128413 32288164 ~ 32293251 (-)
bc10 bc10 coding downstream 155019 32261170 ~ 32266645 (-)
LOC110527654 LOC106582632 coding downstream 247128 32075882 ~ 32174536 (-)
LOC110527652 pigu coding downstream 1323747 31076887 ~ 31097917 (-)
LOC118965410 NA coding upstream 119308 32543958 ~ 32544012 (-)
LOC110527664 LOC106582643 coding upstream 367530 32792180 ~ 32822397 (-)
LOC110527666 if6 coding upstream 473696 32898346 ~ 32913140 (-)
fam83c fam83c coding upstream 517256 32941906 ~ 32950746 (-)
LOC110527668 LOC106582647 coding upstream 535209 32959859 ~ 32998873 (-)
G598355 NA non-coding downstream 592 32420321 ~ 32421072 (-)
G598356 NA non-coding downstream 5378 32415767 ~ 32416286 (-)
G598304 NA non-coding downstream 88632 32319013 ~ 32333032 (-)
G597665 NA non-coding downstream 379588 32041868 ~ 32042076 (-)
G598394 NA non-coding upstream 8955 32433605 ~ 32433947 (-)
G598398 NA non-coding upstream 13969 32438619 ~ 32438825 (-)
G598409 NA non-coding upstream 27249 32451899 ~ 32452191 (-)
G598411 NA non-coding upstream 29839 32454489 ~ 32454706 (-)
G598418 NA non-coding upstream 38489 32463139 ~ 32463377 (-)
G598354 NA other downstream 1516 32418190 ~ 32420148 (-)
G596433 NA other downstream 1342346 31078512 ~ 31079318 (-)
G596352 NA other downstream 1485050 30936165 ~ 30936614 (-)
G596039 NA other downstream 1558344 30862857 ~ 30863320 (-)
G596094 NA other downstream 1577040 30844181 ~ 30844624 (-)
G599058 NA other upstream 813397 33237359 ~ 33239795 (-)
G599788 NA other upstream 1251429 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 1345400 33770050 ~ 33774908 (-)
G600721 NA other upstream 2189842 34614492 ~ 34614875 (-)
G600872 NA other upstream 2540797 34965447 ~ 34966786 (-)

Expression

si:ch211-15p9.2(LOC106582638) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

si:ch211-15p9.2(LOC106582638) Expression in each Bioproject

Bar chart with 12 bars.
si:ch211-15p9.2(LOC106582638) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network