nfs1 (nfs1)


Basic Information

Item Value
gene id nfs1
gene name nfs1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32468013 ~ 32480794 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609082.2
CTGTTCTATTTGAGAATGGCGCTCCTCCCTCGCCGCTTTTGCCCATTCCTGTCGCTGGCCATAGACTCGGGTTAATAGAACTCCCTCGCTGCCATTTTGACGGTTCCTCACATGATGACCGTGTCGACAAGGATTTGATGCGTCTTAATAATTAAACCAGCCTGTTAATCGAATACATTGTTATACCCGGGTCTCACAAAACAGGCAAACATAGAGATCTGCAAGTTTATTTTCCTCGCTGCGAATCCTGTTTGTCACTGGTGAAGGTTAGCTACAACTGTATAGCAAGGTTAGCAAAACATTACTGTGAAGATGATGAGGAAGACTGTTACGACGAAGCTTCTGGGATCCCTGCGAGGGTTCCCAAGCCACCGAGTAAACTATGCGGTGAATGCTGTTGCGAGAGAATTGATCAAAAGTAGGGAACTGGAGAACGATGAGTTGCGACCTCTGTACATGGATTTTCAAGCAACAACACCAATGGATCCAAGAGTTCTGGATGCAATGCTTCCCTATCAAGTTAATTATTATGGTAACCCTCACTCCAGAACACATGCATATGGCTGGGAAAGTGAAAGTGCAATGGAAAAAGCTAGAAAGCAAGTGGCAGACCTGATTGCTGCAGATCCTCGTGAGATCGTGTTCACAAGTGGTGCCACTGAATCCAATAATATGTCAATCAAAGGTGTGGCCCGATTTTACAAATCTAAGAAGAAGCATGTGATCACCACTCAGACGGAGCATAAGTGTGTGCTGGACTCCTGTCGAGTCTTGGAAGCAGAGGGCTTTGACATAACCTATCTTCCCGTGAAGACTAATGGCTTGGTTGACCTACAGctACTGGAGGGAACAATTCGTCAAGACACAAGTTTGGTGTCTGTGATGACCGTGAACAATGAGATTGGTGTGAGGCAGCCTGTCGAAGACATAGGTCGAATCTGCCGGTCAAGGAACGTGTTCTTCCACACTGATGCAGCTCAAGCTGTGGGAAAAATCCCCATCAATGTATCTGACTGGAAGGTAGACCTGATGTCCATCAGCGGGCACAAAATATATGGTCCTAAAGGGGTCGGGGCACTGTATGTGCGGCGCCGGCCCCGGGTTCGAATGGAGCCACTGCAGAATGGTGGAGGCCAGGAGAGGGGGCTTCGCTCAGGGACAGTGCCCACTCCTCTGGCTGTGGGACTGGGAGCAGCCTGTGATATAGCCCAGCAGGAGCTAGAGTATGATCACAGCCGGGTGTCCATGTTGGCAAACCGCCTTGTGCGCAAAATCATGTCAGAGATCCCTGATGTTGTGATGAATGGTGACCCGGAGCAAAGATACCCAGGATGCATTAATTTGTCCTTTGCCTACGTGGAGGGAGAGAGTCTGTTGATGGCCCTGAAGGATGTCGCTCTATCATCTGGCAGTGCCTGCACTTCTGCTTCATTGGAGCCTTCATATGTCTTGAGAGCTATTGGAACAGATGAGGACCTGGCCCACTCCTCAATCAGATTTGGAATCGGACGATTTAGCACGGAGGCAGAAGTGGACTATACAGCGGACAAGTGCATTCAGCAGGTCAAACGCctgagagagatgagCCCCTTGTGGGAGATGGTGCAAGAAGGAATCGATCTGAAGAGCATCAAATGGACGCAGCACTAAAGAAAGCCTTCAGGAAACATACCTAAGAGCATTGTGAATACTAAGCTTGTTTAGTTTGCTGCATACTATGCCACTCCTGTGATGAGTGGTAATTATTTCTACTGTCAAGAAACACGCACAACTTCCTGACTTACTTTAGTGTAGGCTTATGACTAGATTTTGTATTGGTAGACCTGAATAATTGGTTCCTTTTGTATTTGACAAAGTATTATTATTGATGCATATATTGTGCAGTAGTTAAAGTTTGTTCATACGCACATCCTTAAAAATGTAGGTGCTGGGCTAATAAAGAAACCTTGTAAAGAACAAAGTCCCTTAAAGCATTTAATTGGGAGCATAAATTTGTGTGCATACCTTCCTGTTCTTTACAAGTGCTCTTAACATAATTTATCAGCTGCTTTGACCATGGGATTCCATGACTGAGAGCAAGTTACAGAATGGTTAATTCATGTAGCATGTGCAAGATTCCATTTAGTTCATGGATAAGTCATTATACGTTGACAGCATGCTAACAAGGTTAAAGTACAGGTTTCATGTCACTAAAGGaggaaattgattaaatatttccTTTATCTCAATGTGTGAAATGTAATGCCAATCTTGTAGGTTAACAGTCTTCCAATCATGGAAATTCTCCCCAGTTGGTTTGTATACAGTCTCTGGCAAAATGTGTATTGTTTGTATGAATCTTGCATGTTATCATTTAAACTGATTTGAAAATGTATTGTGAGGGAAGTATGCAAAACCATTTACATGGCCAGCTGTTTTATGACATCAGTATAATCTACCACCACCGTGACTGAACATTTACAGTGCTTGTTGTTTCTGTTTGCTGTGCCATCTGCTGCATGTACAGACTCATTACTCTTCCCAAAATGTCTTTCCATAATGTCCAACAGCAATCTAATCTCacataatacatacatacatgcatatgtTTGTAGCTAGCACTCCAATAAAAATTTGATTCGGCCTGA
>XM_036983155.1
CTGTTCTATTTGAGAATGGCGCTCCTCCCTCGCCGCTTTTGCCCATTCCTGTCGCTGGCCATAGACTCGGGTTAATAGAACTCCCTCGCTGCCATTTTGACGGTTCCTCACATGATGACCGTGTCGACAAGGATTTGATGCGTCTTAATAATTAAACCAGCCTGTTAATCGAATACATTGTTATACCCGGGTCTCACAAAACAGGCAAACATAGAGATCTGCAAGTTTATTTTCCTCGCTGCGAATCCTGTTTGTCACTGGTGAAGGTTAGCTACAACTGTATAGCAAGGTTAGCAAAACATTACTGTGAAGATGATGAGGAAGACTGTTACGACGAAGCTTCTGGGATCCCTGCGAGGGTTCCCAAGCCACCGAGTAAACTATGCGGTGAATGCTGTTGCGAGAGAATTGATCAAAAGTAGGGAACTGGAGAACGATGAGTTGCGACCTCTGTACATGGATTTTCAAGCAACAACACCAATGGATCCAAGAGTTCTGGATGCAATGCTTCCCTATCAAGTTAATTATTATGGTAACCCTCACTCCAGAACACATGCATATGGCTGGGAAAGTGAAAGTGCAATGGAAAAAGCTAGAAAGCAAGTGGCAGACCTGATTGCTGCAGATCCTCGTGAGATCGTGTTCACAAGTGGTGCCACTGAATCCAATAATATGTCAATCAAAGGTGTGGCCCGATTTTACAAATCTAAGAAGAAGCATGTGATCACCACTCAGACGGAGCATAAGTGTGTGCTGGACTCCTGTCGAGTCTTGGAAGCAGAGGGCTTTGACATAACCTATCTTCCCGTGAAGACTAATGGCTTGGTTGACCTACAGctACTGGAGGGAACAATTCGTCAAGACACAAGTTTGGTGTCTGTGATGACCGTGAACAATGAGATTGGTGTGAGGCAGCCTGTCGAAGACATAGGTCGAATCTGCCGGTCAAGGAACGTGTTCTTCCACACTGATGCAGCTCAAGCTGTGGGAAAAATCCCCATCAATGTATCTGACTGGAAGGTAGACCTGATGTCCATCAGCGGGCACAAAATATATGGTCCTAAAGGGGTCGGGGCACTGTATGTGCGGCGCCGGCCCCGGGTTCGAATGGAGCCACTGCAGAATGGTGGAGGCCAGGAGAGGGGGCTTCGCTCAGGGACAGTGCCCACTCCTCTGGCTGTGGGACTGGGAGCAGCCTGTGATATAGCCCAGCAGGAGCTAGAGTATGATCACAGCCGGGTGTCCATGTTGGCAAACCGCCTTGTGCGCAAAATCATGTCAGAGATCCCTGATGTTGTGATGAATGGTGACCCGGAGCAAAGATACCCAGGATGCATTAATTTGTCCTTTGCCTACGTGGAGGGAGAGAGTCTGTTGATGGCCCTGAAGGATGTCGCTCTATCATCTGGCAGTACATCATTCGCGTCGGCCTGCtcaaaggaaaaaaaggattctgccaatccgtgTGCCTGCACTTCTGCTTCATTGGAGCCTTCATATGTCTTGAGAGCTATTGGAACAGATGAGGACCTGGCCCACTCCTCAATCAGATTTGGAATCGGACGATTTAGCACGGAGGCAGAAGTGGACTATACAGCGGACAAGTGCATTCAGCAGGTCAAACGCctgagagagatgagCCCCTTGTGGGAGATGGTGCAAGAAGGAATCGATCTGAAGAGCATCAAATGGACGCAGCACTAAAGAAAGCCTTCAGGAAACATACCTAAGAGCATTGTGAATACTAAGCTTGTTTAGTTTGCTGCATACTATGCCACTCCTGTGATGAGTGGTAATTATTTCTACTGTCAAGAAACACGCACAACTTCCTGACTTACTTTAGTGTAGGCTTATGACTAGATTTTGTATTGGTAGACCTGAATAATTGGTTCCTTTTGTATTTGACAAAGTATTATTATTGATGCATATATTGTGCAGTAGTTAAAGTTTGTTCATACGCACATCCTTAAAAATGTAGGTGCTGGGCTAATAAAGAAACCTTGTAAAGAACAAAGTCCCTTAAAGCATTTAATTGGGAGCATAAATTTGTGTGCATACCTTCCTGTTCTTTACAAGTGCTCTTAACATAATTTATCAGCTGCTTTGACCATGGGATTCCATGACTGAGAGCAAGTTACAGAATGGTTAATTCATGTAGCATGTGCAAGATTCCATTTAGTTCATGGATAAGTCATTATACGTTGACAGCATGCTAACAAGGTTAAAGTACAGGTTTCATGTCACTAAAGGaggaaattgattaaatatttccTTTATCTCAATGTGTGAAATGTAATGCCAATCTTGTAGGTTAACAGTCTTCCAATCATGGAAATTCTCCCCAGTTGGTTTGTATACAGTCTCTGGCAAAATGTGTATTGTTTGTATGAATCTTGCATGTTATCATTTAAACTGATTTGAAAATGTATTGTGAGGGAAGTATGCAAAACCATTTACATGGCCAGCTGTTTTATGACATCAGTATAATCTACCACCACCGTGACTGAACATTTACAGTGCTTGTTGTTTCTGTTTGCTGTGCCATCTGCTGCATGTACAGACTCATTACTCTTCCCAAAATGTCTTTCCATAATGTCCAACAGCAATCTAATCTCacataatacatacatacatgcatatgtTTGTAGCTAGCACTCCAATAAAAATTTGATTCGGCCTGA

Function

symbol description
nfs1 Predicted to enable cysteine desulfurase activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to act upstream of or within [2Fe-2S] cluster assembly. Predicted to be active in cytosol; mitochondrion; and nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human NFS1 (NFS1 cysteine desulfurase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006534 cysteine metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0031071 cysteine desulfurase activity molecular_function

KEGG:

id description
K04487 iscS, NFS1; cysteine desulfurase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609082.2 False 2627 mRNA 0.44 13 32468013 32480794
XM_036983155.1 True 2681 mRNA 0.44 14 32468013 32480794

Neighbor

gene id symbol gene type direction distance location
LOC110527657 rbm39 coding upstream 60015 32345648 ~ 32407998 (+)
LOC110528942 NA coding upstream 210619 32196966 ~ 32257394 (+)
LOC110531742 LOC106594194 coding upstream 454810 32007023 ~ 32013203 (+)
LOC110527653 LOC106582631 coding upstream 751786 31204504 ~ 31716227 (+)
LOC118965379 NA coding upstream 1393750 31073345 ~ 31074263 (+)
rbm12 rbm12 coding downstream 142 32480936 ~ 32492404 (+)
LOC110527660 LOC106565032 coding downstream 8073 32488867 ~ 32519712 (+)
fer1l4 LOC106582641 coding downstream 43016 32520230 ~ 32620619 (+)
unm_sa1614 LOC108424671 coding downstream 168747 32649541 ~ 32765702 (+)
map1lc3a map1lc3a coding downstream 368101 32848895 ~ 32879742 (+)
G597944 NA non-coding upstream 1927 32465805 ~ 32466086 (+)
G597943 NA non-coding upstream 3488 32463936 ~ 32464525 (+)
G597923 NA non-coding upstream 16723 32451053 ~ 32451290 (+)
G597921 NA non-coding upstream 19614 32448169 ~ 32448399 (+)
G597919 NA non-coding upstream 22668 32445118 ~ 32445345 (+)
G597935 NA non-coding downstream 12318 32493112 ~ 32494614 (+)
G598070 NA non-coding downstream 238259 32719053 ~ 32719510 (+)
G598074 NA non-coding downstream 243879 32724673 ~ 32724929 (+)
G596297 NA other upstream 1385723 31081721 ~ 31082290 (+)
G596168 NA other upstream 1564126 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 2435392 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 2939103 29528027 ~ 29528910 (+)
G599004 NA other downstream 755019 33235813 ~ 33236636 (+)
G599123 NA other downstream 809732 33290526 ~ 33295528 (+)
G600013 NA other downstream 1485495 33966289 ~ 33966755 (+)
G600431 NA other downstream 2278553 34759347 ~ 34759658 (+)
G600531 NA other downstream 2490334 34971128 ~ 34971405 (+)

Expression


Co-expression Network