LOC110527660 (LOC106565032)


Basic Information

Item Value
gene id LOC110527660
gene name LOC106565032
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32488867 ~ 32519712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527660
TTTCGCCTCAGCAGCATGGCTGTGGTCATCCGCTTGCAGGGTCTCCCGATAGTGGCGGGCACCATGGACATACGCCATTTCTTCTCTGGATTGACTATCCCGGATGGTGGGGTGCATATTGTAGGGGGTGAACATGGTGGATACTCAATGTGTGTCAAAAGTAAAGCTTTCCATTTCATGCAGCAATCTCCTCAACAAAGACGTTGGATCCAAGTCCGACCCCCTCTGCGTGATGATGCAGAGCATCGGGAATGACAAGTGGACCGAGTTGGACCGCACGGAGAGGGTGAAGAACTGCCAGGACCCTGAGTTCTCCAAGAAGCTGCTCCTGGACTACCACTTTGAGAGAGTGCAGAAGTTGAAGCTGGGTGTCTGACATAGACAACAAATCTGTTGATCTGAATGATGATGACTTCCTGGGGGGGGTTGAGTGCACACTGGGACAGATTGTGTCCAGCAAGAAGCTTACCAGACCTCTACAAATGAAGAAGGGTAAGCCTGCAGGCAAAGGCATCATTACTATTACTGCTGAGGAGATAAAGGATAACAGGGACATTGTGCTGGAGTTGGAGGCTAAAGGCCTGGATAAGAAGgaCTTGTTTGGGAAATCTTATCCATTCCTAGAGTTCTTTAAGCAAGAAGATGATGGCAGGTGGCAGCTGGTTCACAGAACAGAGgtTATCAAGAATACTTTGAGTCCATCATGGAATAAATTCAGTGTGGCTTTGCAAACATTCTACTATTGTGACATGAGCAAACCAATCAAGGTCCACTGCTCTGATTATGATAGTGATGGCTCGCATGAACATATCGGTGTTTTCCAAACTAATGTGTCGGAGATACAGAAAGCTGGTTTGCCGGTGGAGTTTGACTGTCCatccagagaagaagaagaagagttaCAAAAACTCTGGAGTAATCCGTGTCAAGTGCTGCCAGATACAGGCAAAGTACACATTCCTGGACTATGTCATGGGAGGTTGCCGAATACATTTTACAGTGGGCATTGACTTCACTGGGTCGAACGGCGACCCTCGATCCCCACAGTCCCTGCATTACCTGAGTCCTGACGTTCTGAACCCCTACCTGGCGGCCACCTGGTCAGTGGGCCTGGTGGTCCAGGACTATGAAACCAATACTTTGTCCTACTCATCATCACCGATGGGGAGATCACAGACCCCGGACCAGACCCGGGACGCTATCGTCAAGGCCTCACGCCTGCCCATGTCCATCATCATCATCGGGGTGGGCGAAGCCAACTTCAAGGCAATGGAGCTGCTAGATGGAGACGAAGGCATTCTCAAGTCCCTGAGTGGCAAACCCGTGGCCAGGGACATTGTACAGTTTGTGCCCTTCAGACAGTTTGCCAATGATCCTAAGGAAGCCCTCGCCCAGAGCGTCTTGGCTGAAGTGCCAAATCAACTTATGTCCTACTTCAAAATGCTGAAACTAGATCCAGTCAATGTTGCTGCCATCAAGACTTAGTGGAGCAAGCAGAACTGCAGTGCTTCACCCTTCTAGCCACACGAGGGAGCCAACACACCACACAGGGAAATTATCAGAAGTGTAAATCACATCCTGGAATTACTGTGTCAATGCTCATTGTACCTTTTGATACCAATTATGTACCACATGTAACtgtattttctattttattttcaaCAATCATAGATATTTCTTATTATTCTTTCATTCCTCCGAGTCAGGAATTAACAAGGAGTTCAACAATGGTGATGATCCAAAATTGGGGAAAAGGAGGGCTTTAATGCATTTCATGAAATGCTCCTTCAAAACATTTGATGGAATAAAGTAGGCTACTCACGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527660 True 1826 mRNA 0.47 13 32488867 32519712

Neighbor

gene id symbol gene type direction distance location
nfs1 nfs1 coding upstream 8073 32468013 ~ 32480794 (+)
LOC110527657 rbm39 coding upstream 80869 32345648 ~ 32407998 (+)
LOC110528942 NA coding upstream 231473 32196966 ~ 32257394 (+)
LOC110531742 LOC106594194 coding upstream 475664 32007023 ~ 32013203 (+)
LOC110527653 LOC106582631 coding upstream 772640 31204504 ~ 31716227 (+)
fer1l4 LOC106582641 coding downstream 4098 32520230 ~ 32620619 (+)
unm_sa1614 LOC108424671 coding downstream 129829 32649541 ~ 32765702 (+)
map1lc3a map1lc3a coding downstream 329183 32848895 ~ 32879742 (+)
sdc4 LOC106582650 coding downstream 685602 33205314 ~ 33215912 (+)
LOC110528943 NA coding downstream 771994 33291706 ~ 33297076 (+)
G597944 NA non-coding upstream 22781 32465805 ~ 32466086 (+)
G597943 NA non-coding upstream 24342 32463936 ~ 32464525 (+)
G597923 NA non-coding upstream 37577 32451053 ~ 32451290 (+)
G597921 NA non-coding upstream 40468 32448169 ~ 32448399 (+)
G597919 NA non-coding upstream 43522 32445118 ~ 32445345 (+)
G598070 NA non-coding downstream 199341 32719053 ~ 32719510 (+)
G598074 NA non-coding downstream 204961 32724673 ~ 32724929 (+)
G598078 NA non-coding downstream 208255 32727967 ~ 32728258 (+)
G596297 NA other upstream 1406577 31081721 ~ 31082290 (+)
G596168 NA other upstream 1584980 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 2456246 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 2959957 29528027 ~ 29528910 (+)
G599004 NA other downstream 716101 33235813 ~ 33236636 (+)
G599123 NA other downstream 770814 33290526 ~ 33295528 (+)
G600013 NA other downstream 1446577 33966289 ~ 33966755 (+)
G600431 NA other downstream 2239635 34759347 ~ 34759658 (+)
G600531 NA other downstream 2451416 34971128 ~ 34971405 (+)

Expression


Co-expression Network