map1lc3a (map1lc3a)


Basic Information

Item Value
gene id map1lc3a
gene name map1lc3a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32848895 ~ 32879742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609094.2
actcctcctccacatttactagATCGGTAGAACAGTGCAGAAGATAGCCTCCCCCATCTCTCGTGAGGACTAAAAAGGAAACGCTTGCTACGTTAGCTAGTTTATTCCAAACCAAAGCTGTTTTTCTAGCTACAGTGAGCACTGATTTGACAGACAAGCAAGAGACAGCATTTGTTGAGGATTCCATAAACAACTTGAGATATTTATTAGTATATTATCTAATTTATAAGCCACAACGTAATCTACAGTGATGCCATCCGATAGACCATTCAAACAAAGAAGGTCATTCGCTGATCGTTGCAAAGAAGTGCATCAAATCCGTGACCAGCACCCCAACAAAATCCCAGTAATCATTGAGCGTTATAAGGGAGAGAAGCAGCTGCCTGTGTTGGACAAGACAAAGTTTCTTGTCCCTGACCATGTCAACATGAGCGAGTTAGTGAAGATAATCAGGCGCCGGCTGCAGCTCAACCCCACGCAGGCCTTCTTCCTCCTGGTCAACCAGCACAGCATGGTGAGCGTCTCCACGCCCATCTCCGAGATCTACGAGCAGGAGCACGACGAGGACGGGTTTCTCTACATGGTTTACGCCTCTCAGGAGACTTTTGGATACTAGGGAGTGAGGGAAGTCTGGTCAAAGAGATGAGGTGAGATAGGAGGCacaggggtacagagagaggccagctgtgtgtgtttctatttTGCCCCCCCGGATGATTGAGTTCCCTTAAGGATAATTAAACAGACACCACCATGTCTTTTCATGACACTAGTAAGTAAACAGGAACGCTATGTGCAACagccccctccctcttccccccaccCCCTTATTCGTTGGAAGTACATTTCTATTAGGAGTCTTTTTTTTCCTTTAGTCATAGGCTAGTGTTTTTGGCCCATTGGTTTTGATTTTATAGTTCATTATTTTATCTCCAACTGGGACCTGGTTTTTCAGATAGAGTAGAACActgttagtgttttattttttttttatataggtGTTGTAACACCTTTTTACTTACGTGGTCATAGGTGCTATTGCCTAAACCAATGGTTATTAATCTTGTCTTGAGTTTCCCCAATATTGACACAGCTTACCTTTCTGGCACAAGTCTGCCAAAAGTGCAAGTGAATTAACTACGCAACAAGACATGCAATTGCTCTACCATAGGCTAAGCCATCAATATCCCTGTACCTAAATCTGCTAGAGCATTGGGTATTTTAGGttgttctcccctctccctcaatTTAAGTACTGTTTAATAATCAATCAGATTAATCAAATTTGTTTGTCTTTAGCAGTTGACTGGTTTCATGCGCAAGATGACCATCCGTACAGTCATAACAGGTAGTGGTGGGTATGTGTGTTGTGATATAAGCTAGTACTTAGAATTGAGTAGTGGAAACAGATGTATAATGTAGAAATAAATACGCTTCTTTGCACATATACATTTATACTATTATAATAAGACTCAGTATTGAAAAGAAATAAATGACTAACACATTTTGATTATTTTGTATCTGATATTCTCTCCTTTAGAACACTGTTCTGTACGTATGCCTTTGGTAAAATGACTTTTGAAACTATGGGTTTGTGATGCACTACATacctttcatgtttttttttgtattgatTTTGGCAATAGATACACTTATtgtattaaaacatttatttttagaaCTGTTTccaaaccaaaaactgaaaaTGTATGTTAACAATTGTGTGTATAAACCATAAAATACTGAAGTTTTGTTTATTTAAATTCCTCAATTGTAACTAATTCTAGGAGTATAGCATTGCTTCAAATTAATTTTAAGCATTCGCTAATGAAGCAATTTGACATTTAAATTCATGGTTCTAGTAGTGGTAAACCAGTGTCAATGTTGAGTACAAATTAGGGGCAAGCAATAACAGCCTTCATATTACTGATAATCTGGGCAGATATATACATTTGCATAAAAGCAGCACCATCACAACGGGCGGATTGTATGGTGTGAGCAGTCAGTCAAAATAATTGTTtattttgtgtttatacttgtggAAAATAAATTCTGATGGATATACTTTCTTTCTTTTA

Function

symbol description
map1lc3a Predicted to enable microtubule binding activity; phosphatidylethanolamine binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in autophagy of mitochondrion; cellular response to nitrogen starvation; and macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Is expressed in forerunner cell group; nervous system; neural tube; and tail bud. Human ortholog(s) of this gene implicated in glioblastoma. Orthologous to human MAP1LC3A (microtubule associated protein 1 light chain 3 alpha).

NR:

description
microtubule-associated proteins 1A/1B light chain 3A

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG:

id description
K10435 MAP1LC; microtubule-associated protein 1 light chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609094.2 True 2078 mRNA 0.39 4 32848895 32879742

Neighbor

gene id symbol gene type direction distance location
unm_sa1614 LOC108424671 coding upstream 86279 32649541 ~ 32765702 (+)
fer1l4 LOC106582641 coding upstream 228276 32520230 ~ 32620619 (+)
LOC110527660 LOC106565032 coding upstream 329183 32488867 ~ 32519712 (+)
rbm12 rbm12 coding upstream 356491 32480936 ~ 32492404 (+)
nfs1 nfs1 coding upstream 368101 32468013 ~ 32480794 (+)
sdc4 LOC106582650 coding downstream 325572 33205314 ~ 33215912 (+)
LOC110528943 NA coding downstream 411964 33291706 ~ 33297076 (+)
LOC110527673 LOC106582652 coding downstream 619678 33499420 ~ 33562457 (+)
or134-1 LOC106582596 coding downstream 715482 33595224 ~ 33596343 (+)
LOC110528945 LOC106582597 coding downstream 736447 33616189 ~ 33617281 (+)
G598091 NA non-coding upstream 107578 32741057 ~ 32741317 (+)
G598090 NA non-coding upstream 107919 32740572 ~ 32740976 (+)
G598078 NA non-coding upstream 120637 32727967 ~ 32728258 (+)
G598074 NA non-coding upstream 123966 32724673 ~ 32724929 (+)
G598189 NA non-coding downstream 40284 32920026 ~ 32920225 (+)
G598678 NA non-coding downstream 43860 32923602 ~ 32923839 (+)
G598682 NA non-coding downstream 45672 32925414 ~ 32925723 (+)
G598683 NA non-coding downstream 47496 32927238 ~ 32927527 (+)
G598714 LOC106582647 non-coding downstream 110392 32990134 ~ 32998834 (+)
LOC110531742 LOC106594194 other upstream 838965 32007023 ~ 32013203 (+)
G596297 NA other upstream 1766605 31081721 ~ 31082290 (+)
G596168 NA other upstream 1945008 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 2816274 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 3319985 29528027 ~ 29528910 (+)
G599004 NA other downstream 356071 33235813 ~ 33236636 (+)
G599123 NA other downstream 410784 33290526 ~ 33295528 (+)
G600013 NA other downstream 1086547 33966289 ~ 33966755 (+)
G600431 NA other downstream 1879605 34759347 ~ 34759658 (+)
G600531 NA other downstream 2091386 34971128 ~ 34971405 (+)

Expression


Co-expression Network