LOC110527666 (if6)


Basic Information

Item Value
gene id LOC110527666
gene name if6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32898346 ~ 32913140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609097.2
TTATTTGCATAGCTAATCCGATATGTCAAACATTCAAACGTAGCTCAATAACTGTAGTGTGTATGGGAACCAGCCCGTGGTCTTGGATTTTCTTGAAAATGAGAAAGTTCTTCCTCAACTGTGAACTTCAACATGGCTGTCAGGGCATCTTTCGAGAAGAACAACGAAATAGGCTGCTTCGCCAAATTAACAAACACATATTGCCTAGTTGCAATTGGTGGGTCAGAGAATTTCTATAGTGTCTTTGAAGGCGAGTTGTCAGAAACCATCCCAGTTGTACATGCCTCAATAGCAGGATGTCGGATAATTGGAAGAATGTGTGTGGGGAATCGTCATGGACTCCTGGTGCCCAACAACACTACTGACCAGGAGCTGCAGCACATTAGGAATTGTCTTCCAGACACGGTGAAGATCCAGAGGGTCGAGGAGCGGCTCTCAGCACTGGGGAATGTCATAGCCTGTAATGACTATGTGGCCCTGGTGCATCCTGATCTGGACAGGGAGactgaggagatcctggcggaCAGTCTGAAGGTGGAGGTGTTCCGTCAGACAGTAGCAGAGCAAGTTCTAGTGGGGAGCTACTGTGCCTTCAGCAATCAGGGGGGACTGGTACACCCCAAAACCTCCATAGAAGACCAGGATGAGCTCTCCTCCCTACTCCAAGTGCCTCTGGTGGCTGGAACAGTGAACCGTGGTAGCGAGGTCATCGCCGCAGGGATGGTGGTAAATGACTGGTGTGCCTTCACTGGGCTGGACACCACCAGCACAGAGCTGTCCGTCATCGAGAGTGTGTTCAGACTGAGCGAGGCGCAGCCCAGTGCAATCGCTACCACGATGAGAGACTCTCTAATTGACAGCCTCGCATAAGATGCCATTCTGCCTTCAATGAAAGGTTTGAGTCATCCCTGAAAATCTGTTGCAGAACACTTGCTGTCATTTGATATGGTTAACACCTTCCACGTTTAGCATTGGAAATGTGTATGGTATGTCAATGCTAGACTTCCCAATTCCTTAAAGAGATGCTCCGGTACTAGGAAATTTACCTCCCGCTTTGGGCTCGATGTGTCTGTGTAGATCATGCATAATATATGAGAAGAATACtttcttacctcaattagccacataATCCTTAGTTTGAAAGCAACTCTTTTCTTGAAGGTGTGCTGCACCATTTTCCTTACATGTTCCCCCATATGGGCCAGCACCCTAGCAATTGGAGTTCTAGATTGAttactatttaatccattttagattaaggctataaagttaacaatgtggaaaaagtcaaggatctgaactttccgaatgcactgtatgtgacgTAGTACGCAATTTTTGGGGGCTACTTTCATAAGTACCGGAAAATCTCTAACTTTGTCCAATTACCATGTTTGGTTATTGAAATGTCGATTTTTCTGTAAAACAGCATCATAAAATGTCAAATTTGAATGCCAGGTTTTCGTTCATCGTTTTCTAACCATTTTGAAACTGGTGTTAAGGTGGTTTCCTTGCTGTGGGAAACTAGAGAAATGTTAATGTTCCCAATGTGAAATGGAAAATGTACATTAAGTTTGCCTGCAAATCAATTACAGTTAAGCCTTGCATGGCAAACACGTGGTTGAGATGTGGAGATATTCCCTGCTGATTTTTTGCAATATACAAAAAATGGATTACCCTATAAGA
>XM_021609096.2
GAGTGTTCCGAGTTCCCAGTAGTTTTCAACACGGCATTGAAAGGGCCAAACACATTGTTGGGGGTTTACGTCATGACGTTGACAAGGAAGTGAACACGTGTGAGGAAAAATAAGAAGTCCACGTTTGCTGAGGCCACAAACCTTGAGAAAGTTCTTCCTCAACTGTGAACTTCAACATGGCTGTCAGGGCATCTTTCGAGAAGAACAACGAAATAGGCTGCTTCGCCAAATTAACAAACACATATTGCCTAGTTGCAATTGGTGGGTCAGAGAATTTCTATAGTGTCTTTGAAGGCGAGTTGTCAGAAACCATCCCAGTTGTACATGCCTCAATAGCAGGATGTCGGATAATTGGAAGAATGTGTGTGGGGAATCGTCATGGACTCCTGGTGCCCAACAACACTACTGACCAGGAGCTGCAGCACATTAGGAATTGTCTTCCAGACACGGTGAAGATCCAGAGGGTCGAGGAGCGGCTCTCAGCACTGGGGAATGTCATAGCCTGTAATGACTATGTGGCCCTGGTGCATCCTGATCTGGACAGGGAGactgaggagatcctggcggaCAGTCTGAAGGTGGAGGTGTTCCGTCAGACAGTAGCAGAGCAAGTTCTAGTGGGGAGCTACTGTGCCTTCAGCAATCAGGGGGGACTGGTACACCCCAAAACCTCCATAGAAGACCAGGATGAGCTCTCCTCCCTACTCCAAGTGCCTCTGGTGGCTGGAACAGTGAACCGTGGTAGCGAGGTCATCGCCGCAGGGATGGTGGTAAATGACTGGTGTGCCTTCACTGGGCTGGACACCACCAGCACAGAGCTGTCCGTCATCGAGAGTGTGTTCAGACTGAGCGAGGCGCAGCCCAGTGCAATCGCTACCACGATGAGAGACTCTCTAATTGACAGCCTCGCATAAGATGCCATTCTGCCTTCAATGAAAGGTTTGAGTCATCCCTGAAAATCTGTTGCAGAACACTTGCTGTCATTTGATATGGTTAACACCTTCCACGTTTAGCATTGGAAATGTGTATGGTATGTCAATGCTAGACTTCCCAATTCCTTAAAGAGATGCTCCGGTACTAGGAAATTTACCTCCCGCTTTGGGCTCGATGTGTCTGTGTAGATCATGCATAATATATGAGAAGAATACtttcttacctcaattagccacataATCCTTAGTTTGAAAGCAACTCTTTTCTTGAAGGTGTGCTGCACCATTTTCCTTACATGTTCCCCCATATGGGCCAGCACCCTAGCAATTGGAGTTCTAGATTGAttactatttaatccattttagattaaggctataaagttaacaatgtggaaaaagtcaaggatctgaactttccgaatgcactgtatgtgacgTAGTACGCAATTTTTGGGGGCTACTTTCATAAGTACCGGAAAATCTCTAACTTTGTCCAATTACCATGTTTGGTTATTGAAATGTCGATTTTTCTGTAAAACAGCATCATAAAATGTCAAATTTGAATGCCAGGTTTTCGTTCATCGTTTTCTAACCATTTTGAAACTGGTGTTAAGGTGGTTTCCTTGCTGTGGGAAACTAGAGAAATGTTAATGTTCCCAATGTGAAATGGAAAATGTACATTAAGTTTGCCTGCAAATCAATTACAGTTAAGCCTTGCATGGCAAACACGTGGTTGAGATGTGGAGATATTCCCTGCTGATTTTTTGCAATATACAAAAAATGGATTACCCTATAAGA

Function

NR:

description
eukaryotic translation initiation factor 6

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0042256 mature ribosome assembly biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03264 EIF6; translation initiation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609097.2 False 1686 mRNA 0.44 7 32898346 32912978
XM_021609096.2 True 1730 mRNA 0.45 7 32898346 32913140

Neighbor

gene id symbol gene type direction distance location
LOC110527664 LOC106582643 coding downstream 75949 32792180 ~ 32822397 (-)
LOC118965410 NA coding downstream 354334 32543958 ~ 32544012 (-)
si:ch211-15p9.2 LOC106582638 coding downstream 473696 32421664 ~ 32424650 (-)
psmf1 psmf1 coding downstream 575188 32305811 ~ 32323158 (-)
LOC110527655 tmem74b coding downstream 605095 32288164 ~ 32293251 (-)
fam83c fam83c coding upstream 28766 32941906 ~ 32950746 (-)
LOC110527668 LOC106582647 coding upstream 46719 32959859 ~ 32998873 (-)
gdf5 gdf5 coding upstream 233288 33146428 ~ 33149825 (-)
oser1 oser1 coding upstream 419856 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 427530 33340670 ~ 33342591 (-)
G598611 NA non-coding downstream 122091 32775820 ~ 32776255 (-)
G598584 NA non-coding downstream 157028 32741014 ~ 32741318 (-)
G598582 NA non-coding downstream 161585 32736311 ~ 32736761 (-)
G598581 NA non-coding downstream 163833 32734191 ~ 32734513 (-)
G598679 NA non-coding upstream 10478 32923618 ~ 32923976 (-)
G598692 NA non-coding upstream 20363 32933503 ~ 32934035 (-)
G598693 NA non-coding upstream 21214 32934354 ~ 32934621 (-)
G598696 NA non-coding upstream 25230 32938370 ~ 32938673 (-)
G598892 NA non-coding upstream 173190 33086330 ~ 33086529 (-)
G598354 NA other downstream 478198 32418190 ~ 32420148 (-)
G596433 NA other downstream 1819028 31078512 ~ 31079318 (-)
G596352 NA other downstream 1961732 30936165 ~ 30936614 (-)
G596039 NA other downstream 2035026 30862857 ~ 30863320 (-)
G596094 NA other downstream 2053722 30844181 ~ 30844624 (-)
G599058 NA other upstream 324907 33237359 ~ 33239795 (-)
G599788 NA other upstream 762939 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 856910 33770050 ~ 33774908 (-)
G600721 NA other upstream 1701352 34614492 ~ 34614875 (-)
G600872 NA other upstream 2052307 34965447 ~ 34966786 (-)

Expression


Co-expression Network