LOC110527668 (LOC106582647)


Basic Information

Item Value
gene id LOC110527668
gene name LOC106582647
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 32959859 ~ 32998873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609099.2
gtacagtaggtggcagtgTATGTACCTAAAAGTTGGATGCGATCAACCAACCAAATCAAAAAGAAGAAGGAGGGCCAGTGTTACAAAACGTGAAGatttaattgaaaaacattctgTTACCCGCTTCTTGGTTTCAATACGTAGGTTAAATATTGTAACTTTTGTCGGAGTCATGTATCGGCGACTATTGCAGTCCGCTGTGAGGAACATAATAAATACGTCAGCATCCAGAGTCACCTTCGGCAAGGCATTAGAGCAAGAGGCCTGTCTTGGAAGAGCTTTAATTGCTTGCCGGTTGTTAGCCTCAACCTCTCCGTCCCAGACACAATGCCGGACCCTTCACAGCACTTCACAGCTCTTTAATGTGAAAGAAACCCCACAGACGgccatggaagaggaggtgggggCCTTCACCAAGCTCATCGAGGCCATGGGCTTCACAGGGCCTCTCAAATACAACAAATGGAAAATCAAGATTGCTGCCTTGCGCATGTACACATGCTGTGTGGAGAGAATCAACTATGATGAATTTTTTGAAAAATGCTCCCTCCCTGACACGCTCAACTCCTGGTTCCTGGTGGCACAGCTCCATGTCTGGATTTGTCTGGTGAGGATTAGGCAAGAAGGCCGTGAGGGGAAGTACATGTGCCGCTACATCGTCCACTCAATGTGGGAGGACGTGGAGCAGAGGAGCAAGATCATGGGGATTGATGCCATTCACCGGAAGGAAAGCATGAGGGCTATGACAGAGACTTTCTATGCTGCTATTTTTGGATATGATGAGGGAATCCTTTCGGACGATGGGGTGCTGGCGGCCGCCCTGTGGAGGAACATGTTCAACCGCCAGTGCGAGGACCCCAGGCAGCTGGAGCTCATGGTGGAGTACGTCCGTAAACAGATGCAGTTTATTGATGCTCTGGACGGGGAGGACCTCCTGCTGACTGGGGAGGTCAATTGGCGCCCCCTTCTGGAGGATAATGCACAGAGCATCCTGAAGGTCCCCACGCCCACCTACAACGACGCTGGGCTCTAAGACGCCCACCCCCATCACCCTGCTTCACCTCCTCTACTCATACTCCTCTGTGGCCAGAAACACTGTACTCTAGGCAGGATAGGGACTCTCACACCTGatctacacaacatacacacactctcccttCACCCCCCCTTCCCCACCCACCCTCCAAAACAACCCCCTAACCAGTGTCCCATCAACCAACTGACTGGCAGGGAATACCATCCACTGCCATTTCCTATAAGTTTTGAGAGTAAGAAGATGCCCGCTTGGAATGTTGCACTTCATTTAAAAAATTATACAGAAATCCTTTCTAGTTATCTATTTTTTTCTGATGCCATAACATTTATAAGCGTTCCTCATAGCCTTTGCGGTTACATGCCCCCCTGTCTAAGTTTTTCTGGTGCAGCGGTTCCGTCTTCCAATGCTCTCCGAATGTTATGGGAAACATATACATGTTGCCTGGCGAATCATCAGTGTATAAAATGGGACTTTTGCCCTAACTGAAATAAGTCTCAAAGgaatattttgtttttatttttgtttgtatGAATCCTCCTTCAAAATAAATCTGTAAACCAGTA

Function

NR:

description
ubiquinol-cytochrome-c reductase complex assembly factor 1

GO: NA

KEGG:

id description
K17662 CBP3, UQCC; cytochrome b pre-mRNA-processing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609099.2 True 1599 mRNA 0.48 9 32959859 32998873

Neighbor

gene id symbol gene type direction distance location
fam83c fam83c coding downstream 9113 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 46719 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 137462 32792180 ~ 32822397 (-)
LOC118965410 NA coding downstream 415847 32543958 ~ 32544012 (-)
si:ch211-15p9.2 LOC106582638 coding downstream 535209 32421664 ~ 32424650 (-)
gdf5 gdf5 coding upstream 147555 33146428 ~ 33149825 (-)
oser1 oser1 coding upstream 334123 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 341797 33340670 ~ 33342591 (-)
LOC118965409 NA coding upstream 502334 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 678471 33677344 ~ 33746700 (-)
G598696 NA non-coding downstream 21186 32938370 ~ 32938673 (-)
G598693 NA non-coding downstream 25238 32934354 ~ 32934621 (-)
G598692 NA non-coding downstream 25824 32933503 ~ 32934035 (-)
G598679 NA non-coding downstream 35883 32923618 ~ 32923976 (-)
G598892 NA non-coding upstream 87457 33086330 ~ 33086529 (-)
G598917 NA non-coding upstream 108106 33106979 ~ 33107223 (-)
G599047 NA non-coding upstream 176722 33175595 ~ 33175859 (-)
G599048 NA non-coding upstream 177127 33176000 ~ 33176295 (-)
G599055 NA non-coding upstream 206464 33205337 ~ 33215908 (-)
G598354 NA other downstream 539711 32418190 ~ 32420148 (-)
G596433 NA other downstream 1880541 31078512 ~ 31079318 (-)
G596352 NA other downstream 2023245 30936165 ~ 30936614 (-)
G596039 NA other downstream 2096539 30862857 ~ 30863320 (-)
G596094 NA other downstream 2115235 30844181 ~ 30844624 (-)
G599058 NA other upstream 239174 33237359 ~ 33239795 (-)
G599788 NA other upstream 677206 33674546 ~ 33677297 (-)
LOC110527679 LOC106565035 other upstream 771177 33770050 ~ 33774908 (-)
G600721 NA other upstream 1615619 34614492 ~ 34614875 (-)
G600872 NA other upstream 1966574 34965447 ~ 34966786 (-)

Expression


Co-expression Network