gdf5 (gdf5)


Basic Information

Item Value
gene id gdf5
gene name gdf5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33146428 ~ 33149825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608266.2
ACAAGTCTCTTACAAGATATCGAGCAGAATAGTTGGAGTTGGAGTTTAAGAGAAGTCAAGTTTTCTCCTCTCAATGCAAACCTTGTCGGACATCTACTGCATATTGGAAAGCAAGACCAGCAACAGGACATTTGCATCACTATGGTACTGAATAGCGGCTCTGGGAGTAAAGGTTTGCACAGTGTAATTTACCATAGAACACTAACTTCTAGTCCACATTTTCACATTTCCAAACTTGTTCATGTTTACTTATTTCAAACGGGAAAAGCCTGTGCGCATTTCTCCCTGCTAAAATTCAAAGGAAGATCAGAGGATGAAAGTACTTAAAAGTGTCCCTCTTTTATTGGGGTGTTGGACTCTCTTATACCTGGACTTTATCCCAGCGTCACTGAGCCATACCGGCATTGCAGAGTGCGCACCCGAGAGCGGAGGAAAGGAGCACACAGACGGGGCAGGTGAAGGAGCCAACCCGGGAATTGGCTCAACTGCCAGGTCAACGGTAGGAAACTACGGCGCAGGGGGTTGGAAGTCTCTAAGTGCTGCGAGGATCACGCGCATTAGAACAGGACCCCCCCTGATAAAGGGCGAGGCAGCCAAAGCGAAAGCTGTGACATCAGTGTCATCACCGCACAGCGTAACAGTCAGCCGTGCTCGTGGAGCTGTCAATTTGGGGCCCGAGGAGGCTGTGCGCTATTGGGTACCCGGCGGGGATGCTACTAAAGCAGCAGCTGCGCCTGCTCCCGTGGCGTTGAGCATACAAACAGGCAAAGGCTCAGGCAGGCCTGGACAGAGCAAAGGAAACACTGTCCCCAGAGCTGCAACACCAGCACGAACTGCACAGCAAAAGGTCGTTGATGTGCAAAAGCACATCGTTCGGTTGGCCCAAATGAGTGTCAAAGCAACGGGCAAACTTAACGGCAGATACTCTCCAAAGCTTCTATTGGTAACTCCGCATGACTACATGTTGTCACTCTATTGGTCACTATCCACGGGAGGGGTGAACACTAGTGTGCTGCACGAGGCTGGCATGGCCAACACCATCACAAGCTTTGTGGATAAAGGACAAGATGCCCGTATTCCCCAGTTGAGAAGACAGAAGTATTACTTCAACATCAGTTCCCTGGAGAAGGAGGGGTTACTGGGTGCTGAGCTGCGTATACTCAGGAAAAGACTGGCTGATCCACACAAAGCACTTTCCACTGACAGAGTTTTCTGCCTGAAGCTTTTCACTTGTGTAGCAGGTAAGCAGAAAGCTACACTGCTCCAAACTCAAACCATCAAGGACCACAATTCACCCAAATGGGAAGTGTTTGACATTTGGAAACTATTCAAGAATTTCAAGAACACCGTCCAGCTTTGCTTTGAGCTGGAGGGTTTAGAACGGGGACGCCCCGTGGACCTCAGGGCACTGGGCTTCAGTCGTCTGGGCAGGCAAACCAAAGAGAAGGCCTTTTTCCTCATGTTCGGGCGCACCAAGAAAAATGACTTGTTCTACAACGAGATCAAAGCTCGGTCTGGCCACGACAACAAGACTGTGTACGAATACCTGTTCACTCAGCGGCGCATGCGCCGAGCTCCAACCAACCGCGGCAAGAAGCTGGCCAAGAACCCCAAGCCTCGTTGCCACAGGAAGCAGCTGCACGTCAACTTCAAGGAGATGGGCTGGGACGATTGGATCATTGCCCCACTAGAGTATGAGGCCTACCACTGCGACGGGGTATGTGACTTCCCTATTCGCTCGCACCTCGAGCCCACCAACCACGCCATCATCCAGACGCTCATGAACTCCATGGACCCCGACTCGACTCCGCCCACCTGCTGCGTGCCCACTCGCCTCAGCCCAATCAGCATCCTCTACATTGACTCGGCCAATAATGTGGTCTACAAACAGTATGAGGACATGGTGGTGGAGTCCTGTGGCTGCAGGTAGCAATGGACGAAAGACCCAGCTGAGGTCTTGGTTTTATAGTTCAGCCTGAAGAGTTTGAGTTAAATCTTTTGAGTAAACAGATTGTTAAACactcaaaagttttagaacactgagttattcaagggttttaatttatttgta

Function

symbol description
gdf5 Predicted to enable cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in perichondrium; pharynx; and skeletal system. Human ortholog(s) of this gene implicated in Parkinson's disease and bone disease (multiple). Orthologous to human GDF5 (growth differentiation factor 5).

NR:

description
growth/differentiation factor 5-like

GO: NA

KEGG:

id description
K04664 GDF5; growth differentiation factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608266.2 True 2071 mRNA 0.50 2 33146428 33149825

Neighbor

gene id symbol gene type direction distance location
LOC110527668 LOC106582647 coding downstream 147555 32959859 ~ 32998873 (-)
fam83c fam83c coding downstream 195682 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 233288 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 324031 32792180 ~ 32822397 (-)
LOC118965410 NA coding downstream 602416 32543958 ~ 32544012 (-)
oser1 oser1 coding upstream 183171 33332996 ~ 33362244 (-)
LOC118965284 NA coding upstream 190845 33340670 ~ 33342591 (-)
LOC118965409 NA coding upstream 351382 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 527519 33677344 ~ 33746700 (-)
LOC110527679 LOC106565035 coding upstream 620246 33770050 ~ 33774908 (-)
G598917 NA non-coding downstream 39205 33106979 ~ 33107223 (-)
G598892 NA non-coding downstream 59899 33086330 ~ 33086529 (-)
G598696 NA non-coding downstream 207755 32938370 ~ 32938673 (-)
G598693 NA non-coding downstream 211807 32934354 ~ 32934621 (-)
G598692 NA non-coding downstream 212393 32933503 ~ 32934035 (-)
G599047 NA non-coding upstream 25770 33175595 ~ 33175859 (-)
G599048 NA non-coding upstream 26175 33176000 ~ 33176295 (-)
G599055 NA non-coding upstream 55512 33205337 ~ 33215908 (-)
G599058 NA non-coding upstream 87534 33237359 ~ 33239795 (-)
G599059 NA non-coding upstream 90917 33240742 ~ 33241142 (-)
G598354 NA other downstream 726280 32418190 ~ 32420148 (-)
G596433 NA other downstream 2067110 31078512 ~ 31079318 (-)
G596352 NA other downstream 2209814 30936165 ~ 30936614 (-)
G596039 NA other downstream 2283108 30862857 ~ 30863320 (-)
G596094 NA other downstream 2301804 30844181 ~ 30844624 (-)
G599788 NA other upstream 526254 33674546 ~ 33677297 (-)
G600721 NA other upstream 1464667 34614492 ~ 34614875 (-)
G600872 NA other upstream 1815622 34965447 ~ 34966786 (-)

Expression


Co-expression Network