sdc4 (LOC106582650)


Basic Information

Item Value
gene id sdc4
gene name LOC106582650
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33205314 ~ 33215912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609100.2
TATATCAATCCGAAGTAGTTCGTAGATTGAATCAGTGACTGACTGAATTGGAAGATACAAGTTGTGTTATAGCAAGGTGATACAGTGGGCAACGTGAACTTTCGAGTGTGTTTATAGGACTTTTCATTCCACTCTTTTCCCAAGTTTACAGCACTTTTTGTTGAAGAAACTGTCAAGAGAAACATGCACAAAGTGTTCCTCGTGTTGTTTTTATTTGCCTCCGTCTACTCTGAGTCGGTGCGGGAGACTGAGACATGGATGCCCATGAAGACGACCCAAGCCGCGTCGCACGACGAGCCTGTTGCGTCTGGTGACGCCCCCAACGGCTCCGACTTTGGCTTCCTTGATGAGGAGCACGACACATTTGACAATGAGGATGAAACGGACGATGAAGACTTCTCTGGCTCTGGAGATGGAGTAACTACTATTACAATCAAAAATGACAATGCCATGACAAAGCCTGACATGAACGACAACAAGATTCCAGACCTGGACATACCCCTGAGGTCCAAACCCACACCGAATGAGATTGAACTGGTCCAGAAGAACAATGAAGTGTCAGTGCGGGGTGCTCCCAAACCCGAGGAGTACCCATCAAACGTACTGATGGCCCATGCGGGGGAGGAGAGCATCTTCAGAAAAACAGAGGTCCTAGCAGCTCTGATTGCTGGTGGAGCAGTGGGGCTGCTCTTTGCCGTCTTCCTCGTCCTTCTGCTCATCTATCGCATGAAGAAGAAGGACGAAGGCAGCTACGACCTGGGAAAGAAGCCCATTTACAAAAAGGCTCCGACAACGGAGATCTACGCCTAAAGCCCACCTTCGTCGGGCTCTCCAGTGCCTCTCGAAAGCAAACCTCTCCTCTTGCCTGCTTACTGTAAAGCTAGGAAGTCCCAGAGGGAGAAAATAACACCAAACAAACTGCTTTTCCTATTCCACCACAAGTTCTAAAGTGGTTCATTTGAAACGGAATCAACATTTTAACTGTCAGCCCCCCCCCTTTTTTCCCTACAGGAAAGATATTGGGTGAAATCTTGACTTTTCTCTCCCACACTCTGTTTTATGACACTAACAAGGTGCAATGACAACTTCACTCAGTGAGGTGACATGGTACAGATATTTATTTTCCTCCCCCTACTCTGAACCTTGGTACCCATACTGGTGCTACAGAAGTCTGTTACTGTAGCATTTTCTTttacaatatttaaaaaaataatcccTGTGTAGGGAAATCATGACGGGTTCTGTTTAGATTCAAATGTATTTTGTCAAACAGATTAAGTCTGAAGTGAATTCCAGATTGATGAAAATACCTTGATACATGCTACTCTATAAATATAGCAGGGGCCAAGCTTGATTCTCCAGGCTGTGTTTTATTTGGACAGTACAGAAATCAACATGCTTTTATTCCTAGGACAAATCGCTGTGTGAATACACCCACTCATCCACACACCACAATTATTTGTAAAAacaagcaacacaacaacacatgatTGGTGCGCTCAGTTTGTCAGACCTCATCTCAGTGATTACAATGCTTGTAAACTAAGCTATTTGAACAGATTATGGTTTATCGCTGTTGACATAACACAATTATCACTGTACGTAGCCATTTTAATAAAATTATGAACTTTGAACTTAGCAATTTCTTGGCAGATGTTTATTTACCAAATATTTTATACTTTGTTTAACCTTACTGTAAATGCTTGGAATAATTGGTTTCTTCATGCCTAAGAAGTCGGGATGTATTGATTCACCGATACAGAGCGGCCCTGGTCCAAATGTTTGACAACCGTTCCAAATGTACAGTGGTATGCATCAGTCAGAAAATCACTAAATTGACAAAAAGCTATCCACCCGATAGGCGGGTGGTAGATGCCCAGTTTTCCTAATGGCTCAGCTCTGGTGCCTACATACACTAGACTTATACGATTTACACACGCGTCAGCTCGGAGACTCAGCTTATGAGCTGTATCGGCAGCAGATTTGAATTTAGAATGGGAAATGAATGTGTTTTATGTAACTAATGTTAGTGAACCGAATCGCATCGATTTGTTCCTCTAATTAAACTGAATCGTACTGACTCGTTTCAAACTAAAACACACAATTCCTGTATCATATCGGAGCCCAACTATCTAGATGCGTATTGAATCGTTGTGAAAGATCCACAGCCCTACTAAGAAGCCTATAGTGGGAAACACGTTTAACTACCAATGCTAGTACTAACTTTTTCTGTCCAATATTTTAGAGTACTTGTTCAATTTAACTATCAAATTGTATTGCCTTTCAGGTTGGGGCTTTTCCCCTCTTAGCTGTTGTAtttgatttaaatgttttatacactAGTTCAAGAAGCAAATAGTTTTAACAgtttttattttgtacatttttatGTTTTTCTTGACATTTTTAAGCCGTATATATTTATGTTTTGTAGAAGGATTGCTATGTAATTGTTCAGGGGAACTGAATTGAGCCATGTGTCATTTGCATGGGGAAAAATCTGCTGCTTTTGTCACAAGATATGTGAATCACCAATTGAGTGGAGAAGTCAATGAATCATTGATTTCTGCATGCATGTTCTGATTTATTTGGAAATAAAGCTATTTTTATGCACATTAA

Function

NR:

description
syndecan-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609100.2 True 2619 mRNA 0.41 5 33205314 33215912

Neighbor

gene id symbol gene type direction distance location
map1lc3a map1lc3a coding upstream 325572 32848895 ~ 32879742 (+)
unm_sa1614 LOC108424671 coding upstream 442698 32649541 ~ 32765702 (+)
fer1l4 LOC106582641 coding upstream 584695 32520230 ~ 32620619 (+)
LOC110527660 LOC106565032 coding upstream 685602 32488867 ~ 32519712 (+)
rbm12 rbm12 coding upstream 712910 32480936 ~ 32492404 (+)
LOC110528943 NA coding downstream 75794 33291706 ~ 33297076 (+)
LOC110527673 LOC106582652 coding downstream 283508 33499420 ~ 33562457 (+)
or134-1 LOC106582596 coding downstream 379312 33595224 ~ 33596343 (+)
LOC110528945 LOC106582597 coding downstream 400277 33616189 ~ 33617281 (+)
LOC110528946 LOC106582609 coding downstream 407325 33623237 ~ 33624475 (+)
G598929 NA non-coding upstream 83280 33117420 ~ 33122034 (+)
G598909 NA non-coding upstream 103967 33101048 ~ 33101347 (+)
G598897 NA non-coding upstream 114470 33090509 ~ 33090844 (+)
G598885 NA non-coding upstream 123739 33081174 ~ 33081575 (+)
G598714 LOC106582647 non-coding upstream 206480 32990134 ~ 32998834 (+)
G598998 NA non-coding downstream 11556 33227468 ~ 33227774 (+)
G598999 NA non-coding downstream 12523 33228435 ~ 33228696 (+)
G599006 LOC106595915 non-coding downstream 18622 33234534 ~ 33235701 (+)
G599005 NA non-coding downstream 21471 33237383 ~ 33239788 (+)
G599007 NA non-coding downstream 24363 33240275 ~ 33240638 (+)
LOC110531742 LOC106594194 other upstream 1195384 32007023 ~ 32013203 (+)
G596297 NA other upstream 2123024 31081721 ~ 31082290 (+)
G596168 NA other upstream 2301427 30903179 ~ 30903887 (+)
G593774 LOC106593940 other upstream 3172693 30031959 ~ 30032621 (+)
G593513 LOC106610831 other upstream 3676404 29528027 ~ 29528910 (+)
G599004 NA other downstream 19901 33235813 ~ 33236636 (+)
G599123 NA other downstream 74614 33290526 ~ 33295528 (+)
G600013 NA other downstream 750377 33966289 ~ 33966755 (+)
G600431 NA other downstream 1543435 34759347 ~ 34759658 (+)
G600531 NA other downstream 1755216 34971128 ~ 34971405 (+)

Expression


Co-expression Network