LOC118965284


Basic Information

Item Value
gene id LOC118965284
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33340670 ~ 33342591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052570.1
gTCTCTGAATTAACTATCTAATATTAGCTACATTTATTAGTTAATACATTGGCTAAAATTGTTTCAGTTCACAGAATTGCCAAATGTCTTGAGCAAGTTTTACATTGAAAATGTCTTTATTTAGCTAGCTcatggttagctagttagcaacaTTACCCTGGCTAGATGGCTACATTAGCCGTCTATTTGTCTAGCCATTAAAATGCATGAGAAATTCAGAGAAACAATTTTAGCTTTCTTTTGGCTTCTATAAACCAACAATAGCTCACTAGTCAGCAGTTTAGCTCGCTAATTAACTAACAAGCTAGCTTAGATGGTGAAGCTCTAGCGATAGGAGTTCTTAATCATGTTTGTTTGCGTCTGTGGGTAGCCTACTTCAAGTACTACTTTACTTGTAGCTACCCTAGCTAGCTGTATTATTTTAGTCTGGCATTCTGAGAGGCTTCATAGATGGACTGATTTAGCATTCTCTCGAGTCAGTGTGCTTACTGTACTGCAGGAAAACATTATGTGTGCTGTTACCCTCTGGACAGCAGATCATTAGTATAGGTAGTAGGCAAGGTTATGTAACCTTATTTGGTGCTATCTGCTATGGTGGGTTTTAAGTTCATTGATATTCACACATTTGTTTTTTTGAGGTAGAATTACTGTAATGTTAATGATTCCAAATTGCTAACCTTATTTGCACTTTGTCTATTCCAGAACCATTTGGTGTGCCTGAGTCTTCTCAACTAGACACAAGATGACCATGATTTGAATGCTGAAACTGAGACGTAATGATGTCGAGGGACATATGCAGAGACCACGAGTATGATTGGACATGGTCCGGATATTTGTGACCACTACCTACAAGGGGTGCAGAAGCACACCAGCACCccattttatttttattccaTGGCCAACAAGCTCTCTAGCTACCCTTTATTCCACACTGTCTTTCAACTTCAGACACTTTGGAACTCTACCCTACCTTCACCCATTTCCCCTATGCTGCTTCCTTCACTTGTTCTTCTGATTTGATAACATCTAGACTCAGTAACACATTTAAGTGTTGTGGTGTGCTGTTTTTGCTATTGACAAGCAACATTGACAAGAAGGGTGTTGATATTGCTGCTAACTTGTTTTGAGTCTTAAGTGCATTTCtcatttgacatttttacatttgagtaatttagcagatcttacccagagcgacttacagtagtgagtgcatacattttcatacttttatttttgttgttgctggagtTGGCTAGTAATTTATATAAAACCTACTTTACGCATCCAGTTTTTCCATTTGTAACCCACCCACCATAATCACAATATGTTGTTTTACATGTATTATTTGTGCTGGCCTAATTCCTAAAAATGGGAAACATAGAAGAATCTGTTCGCTCTCAGATAGTAATAATAGTTCATATGGTGCTCTTTGATGTCCCAGGTGTGTGGCATTGAATGTTTGCTTAACAATGCATACATATTCGTATATGTTATGTtaactatttttttatttaaaacaatGTGATTGTTGGATTTTGGGTGTCTGTGATTCATGGGTGACACTAAACTATTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052570.1 True 1576 mRNA 0.37 2 33340670 33342591

Neighbor

gene id symbol gene type direction distance location
gdf5 gdf5 coding downstream 190845 33146428 ~ 33149825 (-)
LOC110527668 LOC106582647 coding downstream 341797 32959859 ~ 32998873 (-)
fam83c fam83c coding downstream 389924 32941906 ~ 32950746 (-)
LOC110527666 if6 coding downstream 427530 32898346 ~ 32913140 (-)
LOC110527664 LOC106582643 coding downstream 518273 32792180 ~ 32822397 (-)
LOC118965409 NA coding upstream 158616 33501207 ~ 33501261 (-)
LOC110527676 stk4 coding upstream 334753 33677344 ~ 33746700 (-)
LOC110527679 LOC106565035 coding upstream 427480 33770050 ~ 33774908 (-)
ywhaba LOC100136192 coding upstream 474632 33817223 ~ 33835858 (-)
abraa LOC106582659 coding upstream 609384 33951832 ~ 33958325 (-)
G599583 NA non-coding downstream 44980 33290317 ~ 33295690 (-)
G599092 NA non-coding downstream 86082 33254381 ~ 33254588 (-)
G599090 NA non-coding downstream 86766 33253692 ~ 33253904 (-)
G599072 NA non-coding downstream 98797 33241646 ~ 33241873 (-)
G599059 NA non-coding downstream 99528 33240742 ~ 33241142 (-)
G599614 NA non-coding upstream 19700 33362291 ~ 33362642 (-)
G599634 NA non-coding upstream 40220 33382811 ~ 33383239 (-)
G599635 NA non-coding upstream 41240 33383831 ~ 33384133 (-)
G599643 NA non-coding upstream 50777 33393368 ~ 33416307 (-)
G599699 NA non-coding upstream 149079 33491670 ~ 33551343 (-)
G599058 NA other downstream 100875 33237359 ~ 33239795 (-)
G598354 NA other downstream 920522 32418190 ~ 32420148 (-)
G596433 NA other downstream 2261352 31078512 ~ 31079318 (-)
G596352 NA other downstream 2404056 30936165 ~ 30936614 (-)
G596039 NA other downstream 2477350 30862857 ~ 30863320 (-)
G599788 NA other upstream 333488 33674546 ~ 33677297 (-)
G600721 NA other upstream 1271901 34614492 ~ 34614875 (-)
G600872 NA other upstream 1622856 34965447 ~ 34966786 (-)
G600881 NA other upstream 1659289 35001880 ~ 35055228 (-)

Expression


Co-expression Network