LOC110528945 (LOC106582597)


Basic Information

Item Value
gene id LOC110528945
gene name LOC106582597
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33616189 ~ 33617281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611115.2
cttatttacaatgacaaccaaAAATGTTGACTTACTGTAGACAAAAAATGTTTGACTGCAATTTGTTTGAAATGTGCTCCAATTTCTCCATTAAGAAAATGAACTCTACAGCCAGCCTGTTGGACATGAACTTCACATCCCAGATGTCAGTTGGAGGTGGTGGCTATCCTAAAGACAGCTTTAGCACCGCCTTGACCAAGAACATTGTGGCCATGCTGGTGTGGCTGGCCCTAAGTTTTATCAACGGAAGTATGGTCTACACCTTCCTCAAGCATAACTTTTTCTATGAGGACCCGCGCTACATCATGTTCATCTATATGGTCATAAATGACGCCCTGCAGCTCACCCTGGTCACGGCACTATACGTAGTCAGCTACATTTTCTTCAAGATCCATGCTTCCGTGTGCTGCCTGCTGGTGATGACTGCCGTTTTGACCACACGCTCCACCCCTCTCATATTAGCCGGTATGGCCGTGGAGCGCTACCTGTCTATCTGTTTCCCCTTACACTACGGGCACACATGCACAGTGTCACGCACCATTGCCCTCATCGTGGTCATCCTGTTCTTAACGGTGGCCGTGCCTCTCACTGACCTCCTGGTCACACTCATCAAGGAGCCCCTGGGCTTCTTTCGCACCTCCATCTTCTGCGATCACTCCTTCATCTTCCGGGACCGCTCCATCTACTACAAGAATGCTGTGTTTGACAGCATCTATTTTTCCTTTGTGACGCTCACGCTGCTCTACACTTATTGTAAGATCATGCTAACGGCACATGCTGCCTCCACGGACCTAGTGTCCATAAAAAGGGCAAGGAATACAGTGCTACTCCACGGGGTGCAGCTGCTGCTATGCATGCTGGCTTTTGTAGTCCCCTCTCTGCAAGCAGCCCTCATCGCTCTCTTCCCACAGTTTGTCCTGGAGATCCGTTACATCTTTTTCCTGCTGGTCTACATCATCCCACGATTCCTCAGCCCCATGATCTACGGTTTCAGGGACGAGAAGTTCCGCAAATACTGGGCAAGGTACCTAGGAACAATATTTCTAGATTGTGGCCAGCTATGAAAGTGAATCTCAAGTTCAGGTGATAGGAA

Function

NR:

description
PREDICTED: olfactory receptor 52A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611115.2 True 1093 mRNA 0.49 1 33616189 33617281

Neighbor

gene id symbol gene type direction distance location
or134-1 LOC106582596 coding upstream 19846 33595224 ~ 33596343 (+)
LOC110527673 LOC106582652 coding upstream 53732 33499420 ~ 33562457 (+)
LOC110528943 NA coding upstream 319113 33291706 ~ 33297076 (+)
sdc4 LOC106582650 coding upstream 400277 33205314 ~ 33215912 (+)
map1lc3a map1lc3a coding upstream 736447 32848895 ~ 32879742 (+)
LOC110528946 LOC106582609 coding downstream 5956 33623237 ~ 33624475 (+)
si:dkey-43k4.5 LOC106582653 coding downstream 33356 33650637 ~ 33654546 (+)
LOC118965285 NA coding downstream 157600 33774881 ~ 33799728 (+)
tomm34 LOC106582656 coding downstream 184497 33801778 ~ 33807479 (+)
rims4 rims4 coding downstream 266968 33884249 ~ 33944568 (+)
G599332 NA non-coding upstream 12692 33603172 ~ 33603497 (+)
G599180 NA non-coding upstream 233877 33382054 ~ 33382312 (+)
G599177 NA non-coding upstream 237258 33378719 ~ 33378931 (+)
G599171 NA non-coding upstream 243910 33372039 ~ 33372279 (+)
G599164 NA non-coding upstream 251818 33364131 ~ 33364371 (+)
G599376 NA non-coding downstream 47423 33664704 ~ 33665016 (+)
G599379 NA non-coding downstream 50782 33668063 ~ 33668343 (+)
G599326 NA non-coding downstream 57492 33674773 ~ 33675146 (+)
G599328 NA non-coding downstream 58922 33676203 ~ 33677214 (+)
G599429 NA non-coding downstream 128754 33746035 ~ 33749140 (+)
G599123 NA other upstream 320661 33290526 ~ 33295528 (+)
G599004 NA other upstream 379553 33235813 ~ 33236636 (+)
LOC110531742 LOC106594194 other upstream 1606259 32007023 ~ 32013203 (+)
G596297 NA other upstream 2533899 31081721 ~ 31082290 (+)
G596168 NA other upstream 2712302 30903179 ~ 30903887 (+)
G600013 NA other downstream 349008 33966289 ~ 33966755 (+)
G600431 NA other downstream 1142066 34759347 ~ 34759658 (+)
G600531 NA other downstream 1353847 34971128 ~ 34971405 (+)
LOC110527686 LOC106582662 other downstream 2956606 36573811 ~ 36582978 (+)
G602295 gli1 other downstream 3472343 37089624 ~ 37090756 (+)

Expression


Co-expression Network