LOC110528946 (LOC106582609)


Basic Information

Item Value
gene id LOC110528946
gene name LOC106582609
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33623237 ~ 33624475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611116.2
TTCCGCACTAATACCATACTTTAAGCTAGCTAGGTGTGTTAATTTGTAGTCATAGCCAGCTCAGTCCCAAGAAAAACAGTAAGGCTCATTGTTACCTTTTtcattgtacagtatatcaaGTTTAAGCTATCCCTGTAATAATATCTCTGCTTATGGGGATTGTCTGAAACTCTGAATAATATTTGTTTTTCTTTGTCAGGTACTGTCTAAGTACTTCTTGATAGTCAACGAGTAATGAACTTCACCAAAGGCCGAAATCAATTCAACATTGCTTTCATGAACAACTGAATGATGAACAACAGCAGAGCAATGGATAACTTCAATGACGCTTTCATTAAAAACTTCACAACAATTGCCCTGGGTGTAATCATCAACTACATCAATGGAACCTTTGTGTATATTTTCTTCAAGAGTCATGTCTTCTACAGTGACCCAAGGTATATTCTATACATTCACCTGGTGATCAACGACATGATTATGCTGTCTTTTGCAGTGATGCTACAGGTTATAACATATGTGCTTCCATATGGCCTGAATATGTTTGTTTGCTGTATGATGCTTGTAATCACAAGCACAACCAATAGAAACAGTCCATTGAACTTAGCAGGCATGGCCATAGAGCGCTACATTGCTGTCTGTAAGCCCCTGCATCATATTCAGATCTGTACAGTGCGTAGGACCTACATCCTCATCTGCCTCATCTGGAGTGTGGCAGTCATCCCTGCACTCAGTGACATCATCATTGTGCTAGCTACTAAACCATTCACAATTTTTTCCACAGGCGTTCTATGTTATAACAATGCTGTTTATGGTTCCCCATATCATGAGGCTACATCCACGGCGGTCCATATTGTTAACCTGTCATTTGTATTTCTGACATTGTTCGTTACTTATTTTAAGGTCCTTTTTGCTGCAAAAGCTGCCATAACAGACCCAGCGTCGGCTCGAAATGCTCGTAACACAATATTGTTACATGGGGTTCAGCTTCTGTTCTGCATGCTGGGGTATATCACGCCCCTAACCAATATGATTCTCTTGTCTCTCTTCCCAAATAAGCGAACAACCATTCTGTTCTCAAATTTCCTTTTCACCAATGTTTTGCCACGTCTCTTAAGCCCAGTGATTTACGGTTTAAGAGATCAGAAATTTGCCAAGTATATGAGAGTTTACTATTCATGCAAACAATATGATATCCAAATAAAGCCCACTGAAGTTCAAGTGAATTCAAAAAAGCGGTAG

Function

NR:

description
LOW QUALITY PROTEIN: olfactory receptor 4K1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611116.2 True 1239 mRNA 0.39 1 33623237 33624475

Neighbor

gene id symbol gene type direction distance location
LOC110528945 LOC106582597 coding upstream 5956 33616189 ~ 33617281 (+)
or134-1 LOC106582596 coding upstream 26894 33595224 ~ 33596343 (+)
LOC110527673 LOC106582652 coding upstream 60780 33499420 ~ 33562457 (+)
LOC110528943 NA coding upstream 326161 33291706 ~ 33297076 (+)
sdc4 LOC106582650 coding upstream 407325 33205314 ~ 33215912 (+)
si:dkey-43k4.5 LOC106582653 coding downstream 26162 33650637 ~ 33654546 (+)
LOC118965285 NA coding downstream 150406 33774881 ~ 33799728 (+)
tomm34 LOC106582656 coding downstream 177303 33801778 ~ 33807479 (+)
rims4 rims4 coding downstream 259774 33884249 ~ 33944568 (+)
LOC110517647 pcdh9 coding downstream 907501 34531976 ~ 35053552 (+)
G599332 NA non-coding upstream 19740 33603172 ~ 33603497 (+)
G599180 NA non-coding upstream 240925 33382054 ~ 33382312 (+)
G599177 NA non-coding upstream 244306 33378719 ~ 33378931 (+)
G599171 NA non-coding upstream 250958 33372039 ~ 33372279 (+)
G599164 NA non-coding upstream 258866 33364131 ~ 33364371 (+)
G599376 NA non-coding downstream 40229 33664704 ~ 33665016 (+)
G599379 NA non-coding downstream 43588 33668063 ~ 33668343 (+)
G599326 NA non-coding downstream 50298 33674773 ~ 33675146 (+)
G599328 NA non-coding downstream 51728 33676203 ~ 33677214 (+)
G599429 NA non-coding downstream 121560 33746035 ~ 33749140 (+)
G599123 NA other upstream 327709 33290526 ~ 33295528 (+)
G599004 NA other upstream 386601 33235813 ~ 33236636 (+)
LOC110531742 LOC106594194 other upstream 1613307 32007023 ~ 32013203 (+)
G596297 NA other upstream 2540947 31081721 ~ 31082290 (+)
G596168 NA other upstream 2719350 30903179 ~ 30903887 (+)
G600013 NA other downstream 341814 33966289 ~ 33966755 (+)
G600431 NA other downstream 1134872 34759347 ~ 34759658 (+)
G600531 NA other downstream 1346653 34971128 ~ 34971405 (+)
LOC110527686 LOC106582662 other downstream 2949412 36573811 ~ 36582978 (+)
G602295 gli1 other downstream 3465149 37089624 ~ 37090756 (+)

Expression


Co-expression Network