si:dkey-43k4.5 (LOC106582653)


Basic Information

Item Value
gene id si:dkey-43k4.5
gene name LOC106582653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33650637 ~ 33654546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609111.2
AACATGGTAAAAGAGAGTCTCCGAGCCTGGGTCCAGGACGCTGAGGATATCCTGGTGCACATCAATGTTGGAGGCCTGAAGCGCAGCCTGTTCTCGAGCACTCTAAGTAATTTCCCCGATACACGTCTGGGACGCCTGCTGGCCTGCGAGTCCGAGGAGGCCATATTGCAAGTTTGCGACGATTACGACGCTCAACAAAAGGAGTTTTACTTTGACCGCAACCCGGGACTCTTCCCTTACGTGCTGCAATTCTACCAGACCGGCAAACTCCACATCATGGAGGAACTGTGCATCTTCTCTTTCTGCCAGGAAATTGAATACTGGGGAATCAATGAGTTCTTCCTGGACAGCTGCTGTAGCTACCGTTACCATGATCGCAAACTAGAGAGCCGCCACAAGAGCTGGGATGAGGAGAGTGATGTTAGCAGTGTGGACACTTCTGTGGATGAGATCTCAGACCTGAACAAGGACATCCAGCACTTCCAGGAAATGCGCTGTGGAAACGCCCGGAAGTACCTGTGGCTGACTCTGGAGAACCCGGGCTACTCCATTCCCAGTAAGCTTTTCAGCTTTCTCTCCATAGCTGTGGTTCTGACCTCCATATCCATCATGTGCATTAACAGCCTTCCAGAGTACCAGCACTTTGACGAGGATGGCAAACAAGTGGAGGAGCCGACCCTGCAAGCGCTGGAGTTCTTCTGCATCTGCTGGTTCACCTTTGAGGTAGTGACGCGGATGCTTTTGGCGCCCAACAGGAGAAAGTTCTTCCGCCACCCGCTTAACATAATCGACATTGTGTCGGTGTTGCCCATCTATATCACGCTGCCCATTGACCTGGCGTTGGGCAGTGAATCAGAGCTGGGGAACCTGGGCAAATTGGTGCAGGTGTTCCGCCTCATGAGGATATTCAGGGTTCTGAAGCTGGCCAGACATTCAACAGGCCTCAGGTCTTTGGGAGCAACGCTAAGGcaCAGTTACAGGGAGGTTGGCATCCTGCTGCTGTACCTGggcgtgggtgtgtgcgtgttctCTGGCTTTGCCTATACTGCAGAGTATGAGGAGGACGTGGGGCTGGATACCATTCCTGCCTGCTGGTGGTGGGGCACCGTCAGCATGACCACCGTGGGCTACGGCGATGTGGTGCCCGTCACGGTGGCCGGCAAGCTGGCGGCCAGTGGCTGCATCCTGGGTGGGACCCTGGTGGTGGCCCTGCCCATCACTATCATCTTCAACAAGTTCTCTCACTTCTACCGCAAGCAGAAGGCCCTGGAAGCCTCGGTGAGAAACAGCAACAAGAAGAAGGTCAAAGTGTGCAGTGACAATGtgcaggaggaagaggatgaggatggGGGTTTGGATAGGGATAGCCAGTGTCTGGAGGAGCTGGATGAGGATGAAGATGATGGAGGAGTGGTAAATTATAGCTATGTTGATCATCCACCGCTGCCTATGGAGAGGTCCAGCCCGTTGGCGAGGAGGAAAGAGTTCTTCAACTCTGAGTGCTTCACCATAAACACAGGACAGATGACAGAAGAATTATTACAGGGAAAGTaaacacagtatatacatgaaCTGAAATGAATTATAAGCACCCcatgttctctgttctgtttggTGTTACCATAAGGTATTGATTCAGCACTGTGCTGTCTCTGGGTTTGAAGGAACTCTTCCTGAATCCAAAATTGTGACACTGTTAATGGGAAATAATGCCATTGTAATGAAGCTAATATCAAGCCTCCACTAGTTCCTATGGTGTCTTCTGCTTGCCCTGTACAGAACAGAGATTAATTTGGATATGCTCCATCAACACCCCATTCTGAAGTTGCGCAGTGTTCTGTTACTGTATACTTTTAATCACAACTCAATACCAAATTATACCAATGTATTCCTTGTTGGAATTCCTACTTCCTCTTCATATTTGTGAGGGTCTCCTATTACAAAATAGAAAAGAGGCTAGCCTAGGTCTATATTCTACCCTATAGGTTGGAACTTGGAAGAGTTAAGCCAGTGCTGCATTTAGATGAAAGAGGAAAATTATACAAATAAATTGTCTTGCTCAAAACAAATGAATGTATGACACAGCAAACACTTATTATAACATGCAGCTTTAGACAATCCTAACAATTTCCCCTTTTTTAGAGAATGCATACAGTATTGCCACAGCTAGAGCAAGTTTTGAGTGTATAAAGTGTGTAAAAATGTCTGGACACTGCATGTTCTCAAAATCAACATTGTGGGAGGCATTCTCCGCAAGGTCGGCAGAATGCAGATGTTTCCAGGGATCAGGCGTCTTTTTACGCCTGTTATGTTAGGTAAGGTGGGAAGTAATGGCCCTGCTGTACGGTTGAGTGTTGCAATCCACATACAGTGCTGTACCTCCACTAATGCTTTTAGACTGGCCTGCTTGGAGTACCCATCTTTCCGGAAAGTTTGTCCTGTGTCAGAATCCATTAAATGTAACACAAGCTTAGCTCCTGGAACATTAAGGGAATCATTCACCTGATTGAAAACAGATCCTTCCCCCACAGCAACCTTGTCGACTTACTTAAAGACCAACATCTTGTAAGGCAAagtagtagtctacagtacttgTCATTTTGTTTTGCATTATTTTCAATCATTTTGGCAACTATAATTTACCATGTTAAATTTCTATCTTTATGATATGGTAATACTTTCAGACATGGCCGGTGACTCTGCTGGAAATATTCATCAATCATTTTGTGAACTTGACTCCTCATCCAAATTTCTTGCACAACAATGTGCCATAGGACACTATTTGTTGCGTATGTTAATCAATGTCATGCTTCAAGTCTGGCTGCTTCTCCCAGCAGTCAAAATTGGgcacatgacataattttcttgtTTGGTTGAGAAGATGTCAAAAtgacagaaacattaacttgcttgaccatgctgaaTTTATTctaccactgtgtcttcttattgtcgcGGTCTTTAGGCCTATACTGTATATCACGGTCACAAggcatatgaattaacaggttatAGAACAAACATCGCAATTATCACAAAACATAGGTTGCTGCCAGACAGTCCTAAgtaaattattgcttgagaaattgctctttttaataagaagctatttttgtttctgttggaccattttaattgaaaacaatcacagtaaggtactacATTAATTGAAaagatttgatattgagataaaagcACATGTATTTTTTCTGGTTGCTGAAATGACTTTAAAAAACTTCCTTTTTAAATTAATATACAACATTTCCTGTTGCTTTTCATCTTCTACTGCTCTCACACCCTTCACATGCCCATCCATATTTTCTAGTTGTTTACTTGAACTGTTACACAGCTTTGTTCATGAAACCAAATTGAGATGTTTCAT

Function

NR:

description
potassium voltage-gated channel subfamily S member 2-like

GO: NA

KEGG:

id description
K04931 KCNS1, KV9.1; potassium voltage-gated channel delayed-rectifier subfamily S member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609111.2 True 3382 mRNA 0.45 2 33650637 33654546

Neighbor

gene id symbol gene type direction distance location
LOC110528946 LOC106582609 coding upstream 26162 33623237 ~ 33624475 (+)
LOC110528945 LOC106582597 coding upstream 33356 33616189 ~ 33617281 (+)
or134-1 LOC106582596 coding upstream 54294 33595224 ~ 33596343 (+)
LOC110527673 LOC106582652 coding upstream 88180 33499420 ~ 33562457 (+)
LOC110528943 NA coding upstream 353561 33291706 ~ 33297076 (+)
LOC118965285 NA coding downstream 120335 33774881 ~ 33799728 (+)
tomm34 LOC106582656 coding downstream 147232 33801778 ~ 33807479 (+)
rims4 rims4 coding downstream 229703 33884249 ~ 33944568 (+)
LOC110517647 pcdh9 coding downstream 877430 34531976 ~ 35053552 (+)
LOC118965286 NA coding downstream 1071855 34726401 ~ 34728810 (+)
G599332 NA non-coding upstream 47140 33603172 ~ 33603497 (+)
G599180 NA non-coding upstream 268325 33382054 ~ 33382312 (+)
G599177 NA non-coding upstream 271706 33378719 ~ 33378931 (+)
G599171 NA non-coding upstream 278358 33372039 ~ 33372279 (+)
G599164 NA non-coding upstream 286266 33364131 ~ 33364371 (+)
G599376 NA non-coding downstream 10158 33664704 ~ 33665016 (+)
G599379 NA non-coding downstream 13517 33668063 ~ 33668343 (+)
G599326 NA non-coding downstream 20227 33674773 ~ 33675146 (+)
G599328 NA non-coding downstream 21657 33676203 ~ 33677214 (+)
G599429 NA non-coding downstream 91489 33746035 ~ 33749140 (+)
G599123 NA other upstream 355109 33290526 ~ 33295528 (+)
G599004 NA other upstream 414001 33235813 ~ 33236636 (+)
LOC110531742 LOC106594194 other upstream 1640707 32007023 ~ 32013203 (+)
G596297 NA other upstream 2568347 31081721 ~ 31082290 (+)
G596168 NA other upstream 2746750 30903179 ~ 30903887 (+)
G600013 NA other downstream 311743 33966289 ~ 33966755 (+)
G600431 NA other downstream 1104801 34759347 ~ 34759658 (+)
G600531 NA other downstream 1316582 34971128 ~ 34971405 (+)
LOC110527686 LOC106582662 other downstream 2919341 36573811 ~ 36582978 (+)
G602295 gli1 other downstream 3435078 37089624 ~ 37090756 (+)

Expression


Co-expression Network