LOC110527679 (LOC106565035)


Basic Information

Item Value
gene id LOC110527679
gene name LOC106565035
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 33770050 ~ 33774908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609117.2
GTCAGATAGTCACACAGCTTTTACTTTGAAGACAGCTAGCACACGCTTCCTGTTCGAGCCTGTCCTCTCTACGCCAACACCGTCTCTGTTCAATCTTGTGGACGAAATATGCCAAATGAATTAACGCATTCGAAATGATTATCCGTCTTAGTTAAATTCGGATATTGATTGAAAGAACCATACGCGAATCGGTCGGGAACCCTGCACTTGAATTTGGCTATCTCTGATCATTTTTGTGCCCATGACATTTCCATAGATGGACGTTTCGCGTGTCTTGGATTGGACACTTTATTTACTCTGATTGTCCCTTCGCGAGACCAGTAGTATACCTTCCGGAAGATCAACGCCTCAGTGTCGCGCTAACATATTTTGGTGAAGGTCGTGAGTTCTTCTTGTACTCCACAATGTCTCTGGCTAAGCCTGCAATGCGAGGACTCCTCGGGAAGCGTCTGAGGTTCCACCTGCCCATCGCCTTCGCCCTATCAGTGGTGGCTGCAGCAGCTTTCAAGTACGGCGTAACAGAACCAAGGAAACAGGCCTATGCTGATTTCTACAAACATTATGATGCCACAAAGGAGTTCAACAACATGAGGGAAGCTGGTATTTTTGAAAGTGTCAGGCCAACTGGTGAATAAACCCCTGTTGCATTCCTGGTCTGAGATTGACTGATCGAACATTGCTGTTATGTTCTCATAAATAAACTATTCTCTCTA
>TU683321
ACTCTGATTGTCCCTTCGCGAGACCAGTAGTATACCTTCCGGAAGATCAACGCCTCAGTGTCGCGCTAACATATTTTGGTGAAGGTCGTGAGTTCTTCTTGTACTCCACAATGTCTCTGGCTAAGCCTGCAATGCGAGGACTCCTCGGGAAGCGTCTGAGGTTCCACCTGCCCATCGCCTTCGCCCTATCAGTGGTGGCTGCAGCAGCTTTCAAGTACGGCGTAACAGAACCAAGGAAACAGGCCTATGCTGATTTCTACAAACATTATGATGCCACAAAGGAGTTCAACAACATGAGGGAAGCTGGTATTTTTGAAAGTGTCAGGCCAACTGGTGAATAAACCCCTGTTGCATTCCTGGTCTGAGATTGACTGATCGAACATTGCTGTTATGTTCTCATAAATAAACTATTCTCTCTATGGGTGCCTCTGTCTCATCGT

Function

NR:

description
cytochrome c oxidase subunit 6C-1-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609117.2 False 713 mRNA 0.45 4 33770071 33774908
TU683321 True 440 TUCP 0.48 4 33770050 33774614

Neighbor

gene id symbol gene type direction distance location
LOC110527676 stk4 coding downstream 23371 33677344 ~ 33746700 (-)
LOC118965409 NA coding downstream 268810 33501207 ~ 33501261 (-)
oser1 oser1 coding downstream 407827 33332996 ~ 33362244 (-)
LOC118965284 NA coding downstream 427480 33340670 ~ 33342591 (-)
gdf5 gdf5 coding downstream 620246 33146428 ~ 33149825 (-)
ywhaba LOC100136192 coding upstream 42315 33817223 ~ 33835858 (-)
abraa LOC106582659 coding upstream 177067 33951832 ~ 33958325 (-)
LOC118965352 NA coding upstream 1324499 35099407 ~ 35200098 (-)
LOC118965353 NA coding upstream 1837481 35612389 ~ 35612805 (-)
LOC110527685 LOC106582661 coding upstream 2763230 36538138 ~ 36559214 (-)
G599874 NA non-coding downstream 26637 33739312 ~ 33743434 (-)
G599873 NA non-coding downstream 26837 33739013 ~ 33743234 (-)
G599788 NA non-coding downstream 92853 33674546 ~ 33677297 (-)
G599842 NA non-coding downstream 102712 33667130 ~ 33667359 (-)
G599841 NA non-coding downstream 104656 33665210 ~ 33665415 (-)
G599899 NA non-coding upstream 15330 33790238 ~ 33790444 (-)
G599901 NA non-coding upstream 16746 33791654 ~ 33826037 (-)
G599935 NA non-coding upstream 76305 33851213 ~ 33851488 (-)
G599946 NA non-coding upstream 88011 33862919 ~ 33863137 (-)
G599955 NA non-coding upstream 107760 33882668 ~ 33882919 (-)
G599058 NA other downstream 530276 33237359 ~ 33239795 (-)
G598354 NA other downstream 1349923 32418190 ~ 32420148 (-)
G596433 NA other downstream 2690753 31078512 ~ 31079318 (-)
G596352 NA other downstream 2833457 30936165 ~ 30936614 (-)
G600721 NA other upstream 839584 34614492 ~ 34614875 (-)
G600872 NA other upstream 1190539 34965447 ~ 34966786 (-)
G600881 NA other upstream 1226972 35001880 ~ 35055228 (-)
G601245 NA other upstream 1985791 35760699 ~ 35761270 (-)
G604485 NA other upstream 4814247 38589155 ~ 38597519 (-)

Expression


Co-expression Network