LOC110527683 (LOC106582660)


Basic Information

Item Value
gene id LOC110527683
gene name LOC106582660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36470316 ~ 36536037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110527683
ATGGCCCGTATCACTGAGACCCGCgccccatccccctccctctcagagTTCAACACCCCCCCTCTCAgaacacacccctcccttccgGAACCGGCTGGACGAGTCCCCCGCCTGCACCCCTGAGATGGATCTGACCCCCACCCAGTGTGTCCTGCGGAATGTACTATCCATCGATACCGGGGGTGCTCCGGAGTCTGAGGACGGGGGAGGTGGAGGCCATAATGAAGAACACACCTGCGAGGGACACAGCCCCACGCCGAGCGAAGAACAGCAGGAGCACTTTGCCAACAGCGTGCTGAAGCTCCGTGAGAATGGgtaaggaggggggaggggagagggccaGGACGCGGAGGAAGGTGCGGTCCAGAGCAAGGCTGATGATGTGAGACTGCTGTCGGCAGGAAGTGGAGGGTTTCTGGAGGGACTGTTTGGGTGTCTGAAGCCAGTCTGGACCATGATCGGCAAGGCCTACTCCACCGAACACAAACACAACCTGGAAGAGTTGTGGGAGGTACCGTTTGAGGACATCTCAGAGCTGCAGTGGGTGGGCAGCGGGGTCCAGGGGGCTGTCTTCCTGGGGAAACTCCACGGACAGGAAGTAGCTGTGAAGAAGGTTCGAGACATCAAGGAGACAGACATTAGACACCTGAGGAAGCTCAAACACCCCAACATCATCACCTTCAAgGGTATCTGCACCCAGGCTCCTTGCTACTGTATCCTAATGGAGTACTGTGCACAAGGTCAGCTGTATGAGGTGCTAAGGGCGGGCAGGAAAATCACCCCCTCCCTACTCATCGACTGGGCCATGGGCATCGCTGGGGGCATGAACTACCTTCACCTCCACAAGATCATCCACAGGGACCTCAAGTCACCCAACATGTTGATTACGTACGACGACGCAGTGAAGATCTCAGACTTTGGCACATCTAAGGAAATGAGTGATAAGAGCACCAAGATGTCGTTCGCCGGTACGGTCGCATGGATGGCCCCGGAGGTCATCAGGAACGAACCCATCTCAGAGAAGGTTGACATCTGgTCGTTTGGTGTGGTACTGTGGGAGATGCTAACAGGAGAGGTGCCGTATAAAGACGTGGACTCCTCGGCCATCATCTGGGGAGTGGGCAACAACAGCTTGAACCTGCCCGTCCCAGAGAGCTGCCCAGATGGATTCAAAATACTGCTGCGACAGTGCTGGAGCTGTAAGCCCAGGAACAGACCTTCTTTCCGTCAGATCCTCCTACATCTGGATATCGCTTCAGCTGACCTGCTGTCTACCCCACAGGAGACATACTTCAAATCTCAGGCGGAGTGGCGAGTGGAGGTGAAGCAGCACTTTGAAAAGATCAAGTCTGAGGGGACCTGTATACACAGATTGGATGAGGATATGATCATACGACGCAAAGAGGAGCTCAGgcATGCCCTGGACATCCGTGAGCACTACGAGAGGAAACTGGACAGAGCCAACAACCTCTACATGGAGCTCAATGCTGTCATGCTACAGCTGGAACTCAAGGAGAAAGAGCTACTCAAgaGGGAGCATTCCCTGGATAAGAAGTACCCAGTATGCGTCAAAAACCACAGCTCCAGACAAGAACGCTCATCCAACTCCATGGAGAAACTCATCAAGAAACGCAACATACCTCAGAAACTGGCCTCTCACATCAAGAGGCCAGACCTGCTGAAGTCAGAGGTGATCCTCCCCAAACTGGACTCCTCCATGACCCAGGTGACCATCCCCTCTTGCCCCCAGAAGGGCTCCATGTCCCCGGGGAGGTCGCGTCGGGCCAAGCCCCGCTACAGGAAGGCAGGGAAGGGCAGCAGTGGAGACCTGGGCTTGGCTAATACTTTGTCActgaccaccaccacctccacacccagcagcaaGCAGCACCTGGACCCCAGCGCAGCCCTGAGAGGTCTCCAACATGACCTGCTGCTGAAGATGTCCTCGTCCAGCCCAGACCTTATCTCCACCGATCTGGAGGCAGAGGGCCGCCGCAAGGGACAGGAGAAGCCCGGCCTGGAGAGAGGGGGCAGCCAGAGCGCCTCTGCTGGCCTGGGAGGAAGAGGTGGAGGAGGTCGAGGTGGAGTAGGGACAGACGATCAGACAGAGACCCCAATGCGTAGTGACACCCCCAGCGAGGACGCGGCCTCCATCCCGTTCTCCAGTAGCCCAGATTCGCCCTGTGGGAGGGGGGCGACAGCAGGGAGGGGGTCGATGCTGGGAGGCCCAGGGAGAATACcccaggatgaggaggaggagacgggaaTCATAAGGTCACCCAGGTGCTATCTCACACCTGCAGCACTGCTCTACCGGAAACAAGTCACACGCAAACAGAGATGTGGTGTGTcgtcagaggaagaggaaggggaggtgaACAGGGAGGTGGAGTTACCACGGAGACGTCGGCCAGTGAGCATCAACAAGTGCCAGTCCCTGTCCACCTTCAGCTCTGAGAACCTGTCACCAGTGTCCGTGTCGGACGGAGAGGAGGGCAACACCAGTGACCACTCCCACAGTGGCACGCTCGACGTGGTCAGCACCAACACGGATGAGCGGCTGGACGACAAGAGCGACGACCTTCTGTCCCAGGGGTCGGAGATCTCTGTCGACCCTACCCTTGACCCAGCCGAAGGCCTATCAGAGGAGGCCACCATCCGCCAGGTCAAGACCGAGCTCAATTCAGAGCAGAACTATGAGGGCCTGTATGATGACTCTGAGTGTGACAGTGCTGAGCTACTCAGGCTGCACAGAGCCCCAGCCCCATAGGCCCCCAAGCACCAACTGGTGAGGaggccagcccccccccccccccccccccccctcagcccCAGTCTCCTGGACAGGCCTATGTACAGCCAACCAAACCCCCTTACCTCAACCTCCCTTCTCTCACTTCCCAGTCCCAGCCTTGCAAAAACACTTCAACAAGCCAACTCACCTCACCTACAGGTACCTCTGCAACACCATACTACAGATGTAACTTCTACATGTTATAGTAATTATTTCACTATCCGTTGTTCTTTCACTATCCGTTGTTTCTTTCTTCTATATTTTGTCCAAATATTGTCATACTTTATTATCTATTCTATGTAAAGTCTCCCATTCAGATTATATGTCAACATTGTCAGAGAGGCATCTGCACTTTGTTTACTTGATTGGTACTGATTATTTCATGTCCAAAATATTTTGTTTCCTCACAAGGATTGTGCACTGAGTGTCGTTTAATTTATTTATTGGGTATTAGAGAATCAATGTTTACATTCTTCTTTACATtttcacatgtatttataaatgTTTTTCATCAGGGATTTTCTTGTCCAACTTTTTTTTATACAATCTGTATTTTATTTAATGTAacatcaactgtatgtaaatattTGGACCTCTTGGGACAATTTGTCAATTAACAAACATTTGTAAGAGTTGAAATGTGAGACTGGATCATCTAATGGTGCTGACTAATGTTTTACACTAGAGGGCGCTATTGAATTGTACCAGACAACAGAACTCAGGTGCATTCAGGGCACAACATTGTGGATATTTCAGATATAAATAGATTATGTAGAACATACAtacctctctgacatgtagaacaaatgaatcatgtcagctctatgcatgacatttctatctgaaccATTCAATGTTTGCCTACTGAACATGGCCCTGAACAGATATTCTATTGGTCTGATACCGGAtgctgttgatgatgatgatgatgatgattacagGGCATTAATAAGCATAGAAATCtaataattatatttctatggcattAGACAGGTTGAAGAGAACAGAAAAATAATAGATAATGAACAACACCAAGCAATATGTACACTAACTCTGAATCATTCCCCTGACTGCACTGTGGAGTAAACTAAAACTACAGCCCCTTTCTTTCAGGGTCTGACCGCACTTGTTTTTGTTGATTAACCATTGTATTTATTTGGTATTGCAGTCTTTATACTGTATTAAAATGCAATACTATGTACTAGGATACCATTGAGAACAAAAACTCAGGTaaaatctcaaatggcaccctaatcacCACAGCtctgggtcaaaagtagtgcacttcataggaaATAGTGTGCCATTCGAGACGAAGCCTCAGTCACCGACCATTTGCATTACCATCTACAAGTGTCAAGATCCTAGATCAGATCACTAAAGCATGGTTGTAATATAATATGTATGGGTTGTACTTGTATTTTTGTCCAAATGCAGATGTTAGTCAGAGCATGAGGTTCAGATCAAAGGGACTTAATCACCCATAGAAACAGAATCTATAGAAAAAAGGAAATCTACCACTCACGAGTAGCAGACTAGTTTGTTCTTAAACTAACTAGTTGTCTGGCAACTAGTTACTTTCTTGTCAGCTAAGGTTGTGTCCCGATTTCTAAATCCTTATCAACTAAATgcgcacttgttcacttcccttcttGGATTGAAAAGGAAAGGACTGCTGTAAGAAATATGGTGGAATCACCCTCTCCCAAtccaaatacactgctcaaaaaaattaagggaacactaaaataacacatcatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgccgac

Function

NR:

description
mitogen-activated protein kinase kinase kinase 12-like

GO: NA

KEGG:

id description
K04423 MAP3K12, MUK; mitogen-activated protein kinase kinase kinase 12

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110527683 True 4617 mRNA 0.50 15 36470316 36536037

Neighbor

gene id symbol gene type direction distance location
LOC118965354 NA coding upstream 445948 36006411 ~ 36024368 (+)
LOC110517647 pcdh9 coding upstream 1416764 34531976 ~ 35053552 (+)
LOC118965286 NA coding upstream 1741506 34726401 ~ 34728810 (+)
rims4 rims4 coding upstream 2525748 33884249 ~ 33944568 (+)
tomm34 LOC106582656 coding upstream 2662837 33801778 ~ 33807479 (+)
LOC110527686 LOC106582662 coding downstream 37774 36573811 ~ 36582978 (+)
LOC110527688 LOC106582663 coding downstream 132764 36668801 ~ 36679505 (+)
LOC110527690 LOC106582665 coding downstream 332703 36868740 ~ 36896763 (+)
LOC110527691 LOC106582666 coding downstream 371514 36907551 ~ 36913012 (+)
arhgap9 LOC106582667 coding downstream 419139 36955176 ~ 37014054 (+)
G601563 NA non-coding upstream 158620 36310610 ~ 36311696 (+)
G601540 NA non-coding upstream 172778 36254338 ~ 36297538 (+)
G601530 NA non-coding upstream 247775 36221041 ~ 36222541 (+)
G601526 NA non-coding upstream 253872 36216107 ~ 36216444 (+)
G601520 NA non-coding upstream 266883 36203164 ~ 36203433 (+)
G601613 NA non-coding downstream 5245 36541282 ~ 36544739 (+)
G601656 pcbp2 non-coding downstream 9607 36545644 ~ 36556378 (+)
G601681 NA non-coding downstream 48829 36584866 ~ 36585079 (+)
G602133 NA non-coding downstream 322357 36858394 ~ 36858621 (+)
G602137 NA non-coding downstream 325054 36861091 ~ 36861332 (+)
G600531 NA other upstream 1498911 34971128 ~ 34971405 (+)
G600431 NA other upstream 1710658 34759347 ~ 34759658 (+)
G600013 NA other upstream 2503561 33966289 ~ 33966755 (+)
G599123 NA other upstream 3174788 33290526 ~ 33295528 (+)
G599004 NA other upstream 3233680 33235813 ~ 33236636 (+)
G602295 gli1 other downstream 553587 37089624 ~ 37090756 (+)
G604207 NA other downstream 1962994 38499031 ~ 38499662 (+)
G604258 NA other downstream 2048437 38584474 ~ 38594822 (+)
G606400 LOC105027254 other downstream 3590497 40126534 ~ 40141972 (+)

Expression


Co-expression Network