LOC110527684


Basic Information

Item Value
gene id LOC110527684
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 36510994 ~ 36517194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474151.2
gacgtaggtAGATTCTGGTAGTCCTGGCTTCTGGTAGGTTGCTTGTaggtgatagacagtcctctccagCCTGGTGTCAGTATCCCATTGGTTCTCGACAGAGTTCTTTGTCTTTGGAGCCCCTCCCGAAGGCTtttgagtgtgtgcgtgtatttATGGGttttcagtgtgtatattatcTTAGTCAGCCACCCGTGTGGGGGTTTCCAGTGTAGTTAGtatatagagaaacagagagagagggaaggtataACACAGAGTACAAGCCATGATTGCATAGTTAAGCCCAGGCAGACAACAGTCAGTGAATGCGttattacatgttttaatatgttattacaatATCACCCGGGAGTCCTTTTTTTAAATTACTTGCCGGTGGAGCTGGGCTTTCAAATGTGGCTTTGACTCAATGAAGATGCTTTTCCAACCATCTACCCGGACGGCGAGACTGTTTCTAGCAGAAGAGAGATTGCTCCCAGGCAGACCCGCCACAGGCTTGTAATTTCTCTGCGCAAGCATCCCACAAAGGAGGAGCAAGCCACCCAGTTCCAGCCAAAACACAAGAGCGTGTCTTCAAATACAGCAACACTGGTGTGCATTCCTGAAATCTCAGCTCCTTGCAGTCCTCAGCTCCTTGGACTTTTCCAACGATGACTCCAGTTGTCACCCTGATGATGACACAAACACCATCTGCGATGCCAAACTAGTGCTGTCTACACACTCATTCAAGTATAGTGAAGGACTGCTGTGCTGCATGAGACCAGATGGACAGAGGCTGAGGCAGTGGTTGTAATTGCAATAAATacagtttttaaaatatttatatcCTTCAAATAAAGTAAAGATGTTTACACAA
>TU685433
GTGGGGGTTTCCAGTGTAGTTAGtatatagagaaacagagagagagggaaggtataACACAGAGTACAAGCCATGATTGCATAGTTAAGCCCAGGCAGACAACAGTCAGTGAATGCGttattacatgttttaatatgttattacaatATCACCCGGGAGTCCTTTTTTTAAATTACTTGCCGGTGGAGCTGGGCTTTCAAATGTGGCTTTGACTCAATGAAGATGCTTTTCCAACCATCTACCCGGACGGCGAGACTCCACCCAGTTCCAGCCAAAACACAAGAGCGTGTCTTCAAATACAGCAACACTGGTGTGCATTCCTGAAATCTCAGCTCCTTGCAGTCCTCAGCTCCTTGGACTTTTCCAACGATGACTCCAGTTGTCACCCTGATGATGACACAAACACCATCTGCGATGCCAAACTAGTGCTGTCTACACACTCATTCAAGTATAGTGAAGGACTGCTGTGCTGCATGAGACCAGATGGACAGAGGCTGAGGCAGTGGTTGTAATTGCAATAAATacagtttttaaaatatttatatcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474151.2 False 859 mRNA 0.45 5 36510994 36517194
TU685433 True 547 lncRNA 0.44 4 36511190 36517166

Neighbor

gene id symbol gene type direction distance location
LOC118965354 NA coding upstream 486626 36006411 ~ 36024368 (+)
LOC110517647 pcdh9 coding upstream 1457442 34531976 ~ 35053552 (+)
LOC118965286 NA coding upstream 1782184 34726401 ~ 34728810 (+)
rims4 rims4 coding upstream 2566426 33884249 ~ 33944568 (+)
tomm34 LOC106582656 coding upstream 2703515 33801778 ~ 33807479 (+)
LOC110527686 LOC106582662 coding downstream 56617 36573811 ~ 36582978 (+)
LOC110527688 LOC106582663 coding downstream 151607 36668801 ~ 36679505 (+)
LOC110527690 LOC106582665 coding downstream 351546 36868740 ~ 36896763 (+)
LOC110527691 LOC106582666 coding downstream 390357 36907551 ~ 36913012 (+)
arhgap9 LOC106582667 coding downstream 437982 36955176 ~ 37014054 (+)
G601640 NA non-coding upstream 1643 36508987 ~ 36509351 (+)
G601639 NA non-coding upstream 2113 36508676 ~ 36508881 (+)
G601563 NA non-coding upstream 199298 36310610 ~ 36311696 (+)
G601540 NA non-coding upstream 213456 36254338 ~ 36297538 (+)
G601530 NA non-coding upstream 288453 36221041 ~ 36222541 (+)
G601613 NA non-coding downstream 24088 36541282 ~ 36544739 (+)
G601656 pcbp2 non-coding downstream 28450 36545644 ~ 36556378 (+)
G601681 NA non-coding downstream 67672 36584866 ~ 36585079 (+)
G602133 NA non-coding downstream 341200 36858394 ~ 36858621 (+)
G602137 NA non-coding downstream 343897 36861091 ~ 36861332 (+)
G600531 NA other upstream 1539589 34971128 ~ 34971405 (+)
G600431 NA other upstream 1751336 34759347 ~ 34759658 (+)
G600013 NA other upstream 2544239 33966289 ~ 33966755 (+)
G599123 NA other upstream 3215466 33290526 ~ 33295528 (+)
G599004 NA other upstream 3274358 33235813 ~ 33236636 (+)
G602295 gli1 other downstream 572430 37089624 ~ 37090756 (+)
G604207 NA other downstream 1981837 38499031 ~ 38499662 (+)
G604258 NA other downstream 2067280 38584474 ~ 38594822 (+)
G606400 LOC105027254 other downstream 3609340 40126534 ~ 40141972 (+)

Expression


Co-expression Network