LOC110527700


Basic Information

Item Value
gene id LOC110527700
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37710179 ~ 37714146 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474154.2
AAACCATGCAGCGAGCGAGCAGcgatctctctctttaccctgcTAGTGTCCTTGCCCGCTCAACCCAGCCTGACAGCCTCAGCGCCTCACATGGCCCTCTGGCTCATACATATggaggaggatagggagaggagaggaataacaaccacagaaagtgtgtgtgtgtgtgtgtgtgggtaccatATATTTTTCTTCCTGAATATGTGACAGGCAGCCCACATACGTACACACAACAATGTGCACACACGTCTGGCTCTAACACCAATATATCCTCCTTACTTCCTCTAGCCCTCAATCCCTCAGTTCTTCTTCCTGATAATAGGCTCGACTGTCTGACCAAGGGACCCCACATCAGTTGGAACCGAAAGAACAACCCAGACCCTTGGAGCACATACGGTCCACACTATCAGTACAAGTTGGTGGCCGTCAATATGGACTACAAGGCTCTGAAGAAGGAGGGCCCTGACTTCTAAAGGTCCTTCAGGCAACTCCAGGAGCACCAAGTTTGGCAGGACCTCCTGTCATCCTAGTGGCAGGGTCGGGGCAGCCTGAGCCTCGGTCGGgtcctctgtctgtcccctctGCAGTCTCTTCAGAATGCACACCATTTCATATTAACTGTCTTTCCCGTGCACTAACCTACAGTTATAGAAGCAATTGTCTGCATGTGCACAGCAAATACTGTTATTATAACCTACCTGTCTCTTCAGACACCACCCTACAGTATACATCTCTTCATGCATAAAAACCCTAAAGAGATGTCATGTAACAGGCTCTTTCACTTTCACAACCCTACAGTTATTGTAACCTGTCTCTTCACGACCCACAACAGCACTGTTATAGATCTGTCTCTTTATTTTCACCCTAAGGTGATGTATCCTACTTCAtgcacaacagcaaccctaaagTGATGTATCCTTCTTCATGCACAGCAACCCTAAAGTGATGTATCCTTCTTCATGCACAGCAACCCTAAAGTGATGTATCCTTCTTCATGCACAGCAACCCTAAAGTGATGTATCCTTCTTCAGGCACAACCCTGATGTTACATAACTGTCTCTTAACGCTACCTTGAAAACAACACAATTAAACATCAGTCAAAGAAGTCTGGTTACGTTGATTTACATggtctgtgtatatacagtacaatcAAGGGGGGTATACATGCCTACATGTGTTGAGTAGAGTTTGAAGGGTGTAGTGGAAGAGAATAGGAGTTGAGTACATTTAGAATTCATCAGAAAGTATTAAGTGAAAAGCAGTGTATTTTAATAACATTGGAATCACCAGTGTACAAACATTTGACTTCACAAATAAATCAGCCGAACAGAAAACATTTTGTGCTGTGAAATACAGCTGCTGAGCACTAAAATTGTAACAACAAAATACTAGTTCAATCAACGTTGTTTTAAGGAATTTCAACGTAAAAATAATGAAacgtgatgacattgaatcaacgtaGAAAATTGTCATTAACGTAAGGGAACTTAGCATTTTTTTCACACAACTTTGAACTTTTAATCGTggcatggtgaaatgttttgttgatttcacat
>TU687246
gaggatagggagaggagaggaataacaaccacagaaagtgtgtgtgtgtgtgtgtgtgggtaccatATATTTTTCTTCCTGAATATGTGACAGGCAGCCCACATACGTACACACAACAATGTGCACACACGTCTGGCTCTAACACCAATATATCCTCCTTACTTCCTCTAGCCCTCAATCCCTCAGTTCTTCTTCCTGATAATAGGCTCGACTGTCTGACCAAGGGACCCCACATCAGTTGGAACCGAAAGAACAACCCAGACCCTTGGAGCACATACGGTCCACACTATCAGTACAAGTTGGTGGCCGTCAATATGGACTACAAGGCTCTGAAGAAGGAGGGCCCTGACTTCTAAAGGTCCTTCAGGCAACTCCAGGAGCACCAAGTTTGGCAGGACCTCCTGTCATCCTAGTGGCAGGGTCGGGGCAGCCTGAGCCTCGGTCGGgtcctctgtctgtcccctctGCAGTCTCTTCAGAATGCACACCATTTCATATTAACTGTCTTTCCCGTGCACTAACCTACAGTTATAGAAGCAATTGTCTGCATGTGCACAGCAAATACTGTTATTATAACCTACCTGTCTCTTCAGACACCACCCTACAGTATACATCTCTTCATGCATAAAAACCCTAAAGAGATGTCATGTAACAGGCTCTTTCACTTTCACAACCCTACAGTTATTGTAACCTGTCTCTTCACGACCCACAACAGCACTGTTATAGATCTGTCTCTTTATTTTCACCCTAAGGTGATGTATCCTACTTCAtgcacaacagcaaccctaaagTGATGTATCCTTCTTCATGCACAGCAACCCTAAAGTGATGTATCCTTCTTCATGCA

Function

NR:

description
cytochrome c oxidase subunit NDUFA4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474154.2 False 1556 mRNA 0.43 3 37710179 37714146
TU687246 True 847 lncRNA 0.47 3 37710771 37714029

Neighbor

gene id symbol gene type direction distance location
LOC110527696 LOC106582672 coding downstream 461724 37239565 ~ 37248455 (-)
gli1 LOC106566129 coding downstream 501227 37087748 ~ 37208952 (-)
LOC110527694 LOC106582668 coding downstream 671370 37031274 ~ 37038809 (-)
LOC110528947 LOC106582664 coding downstream 852035 36738691 ~ 36858144 (-)
LOC110527685 LOC106582661 coding downstream 1150965 36538138 ~ 36559214 (-)
LOC110527701 LOC102797503 coding upstream 42415 37756561 ~ 37789849 (-)
LOC110527702 ppp1r16b coding upstream 89668 37803814 ~ 37932459 (-)
LOC118965380 NA coding upstream 221225 37935371 ~ 37936376 (-)
LOC110527705 LOC106582679 coding upstream 349143 38063289 ~ 38079634 (-)
LOC110527706 LOC105030694 coding upstream 379057 38093203 ~ 38096522 (-)
G603298 NA non-coding downstream 8749 37701133 ~ 37701430 (-)
G603271 NA non-coding downstream 27528 37682422 ~ 37682651 (-)
G603260 NA non-coding downstream 32390 37677565 ~ 37677789 (-)
G603050 NA non-coding downstream 332172 37377802 ~ 37378007 (-)
G603047 NA non-coding downstream 334624 37375163 ~ 37375555 (-)
G603333 NA non-coding upstream 12518 37726664 ~ 37726881 (-)
G603338 NA non-coding upstream 13906 37728052 ~ 37728348 (-)
G603347 NA non-coding upstream 19937 37734083 ~ 37734295 (-)
G603357 NA non-coding upstream 27395 37741541 ~ 37741793 (-)
G603714 NA non-coding upstream 39260 37753406 ~ 37753677 (-)
G601245 NA other downstream 1948909 35760699 ~ 35761270 (-)
G600881 NA other downstream 2654951 35001880 ~ 35055228 (-)
G600872 NA other downstream 2743393 34965447 ~ 34966786 (-)
G600721 NA other downstream 3095304 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 3935565 33770050 ~ 33774908 (-)
G604485 NA other upstream 875009 38589155 ~ 38597519 (-)
G604484 NA other upstream 875271 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 1348859 39063005 ~ 39123578 (-)
G606135 NA other upstream 2124745 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 2509409 40135298 ~ 40275270 (-)

Expression


Co-expression Network