LOC110527701 (LOC102797503)


Basic Information

Item Value
gene id LOC110527701
gene name LOC102797503
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37756561 ~ 37789849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983189.1
ACAGCGCTCACCTACATGCGGGCTCGTTATTGGTGGAGCCATATCTGTGTCCTATTGGCTCTTCCACCCACACCGTAATCAGAAGCGCGAGATGGACAGAAGTTGAGATTACATTTTATGAGCGTCCTCAACAAACGTtagttttatttttaattaatcaGCTTTACAGTCCGTGCTTTGTTTGTAGTTTGAGAGACATGTTTGTGTGTCGAGGAGCGAGGCTGTCGGCGAAGGCTTTGGAGCAGGGTTTCAACTCCACGACAGGGGCACAATTTAAAACGAACAGACTAACGGTAGTTGACGTTACCTGCACTTTGCCATTACGTAACATCCATGCATTCAAATGCTCCCGAGCTTTTTGTGGATATTTTGTGGCACTTTCGCCTGATGGAAAGCGAGAAAAAAGGGAGAAGGATATGTTTTCCGTGAAGAACCGGGACTCTGTTCGTTTCATAATCACGCATCAGCAACAATTAACTCGAGTAAATTCGTTTTCTTTAAATCTCTCCAACAAAAGTAATGGTAAAAGCTTATTCAACCGTACACATAATGTCACTAGCTCAACTCTTTATCGGACGAATGGAGGCCAAAGCTGGCAGAAGAAACAATACGTAGATGCACTTGAATCTGTGTTTACGTCTGGCGCCAATGTCTGCAATCATCGATTATATCCCACAATGACTGTGCAAATGAGACCTTTTTCCTCTGTTGCTGTTGCTCCCAAACTGGTGGAGGACTCGCCCGCAGATCACGAAGTGGACCAGACTCCAAAGCAGGCCTCATCCAAAGGCCCTGAGGAACCCGAGGTACCGGAGGACAATCCTAGCAAGACCCAGCAGCTGAAGAAGATCTTTAAGGAGTACGGAGCTGTAGGAGTCTCCTTCCACATATGTATGTCCCTCATGTCTCTGGGCATGTTCTACCTCGCTGTGTCCAGTGGGATCGACATGGCTGCTATCCTGTACAAGATAGGATTCAGTGAATCTCTGGTTCAGTCCAAGTTGGCGGCGGGTACCAGTACGTTTGTCCTGGCGTACGCCATCCACAAGCTGTTTGCTCCGCTCCGTATCAGCATCACTGTGATATCAGTGCCTCTTCTTGTACGATACCTCAGAAAGAGTGGCCTCTTCAAGACACCCAACTCACCTACACACTGAGTGGCTGAGACCCCAACCTCCACTAACTTCGATAACTGAGACTTTCCAAATATGACCATTACCATTTCTGGAATCAAGAGGGAATAAGTGTGACAAATTCTTCCAACCATCCCTAGTTTTTCAACTGGAATTTCTGCAGGAGATAAAAACAGATCCAACCGAGGCTGACTTTTAACCCACCTGTAGATCAGTGGCGGTctgtgccgtttaagatgagcgAGGatgattttaaaaatgtatttcttatgagcatggccttatttctattgcagcattttggatgactgtcattcatatttcattcacccagttcaatataACAGTGATGGGTTAAGGCTACTACAATAAGGCTACTTACTACAATCCATCATGAGATTACTACAACCTATCTTATGAGAAGTTTACATTGTGAACTTTCATCAAGATCATTTTTAGTAATCAAGGTGAGACTgtaacacattcaatactgccgtGAACTCTcgtgcctgcatctagctgatctaggttgTAATCATTAGtcaaacagttgcaaacgagagtttctattcgacaaattcaggtatgtttatccccattccatttaagaaatgtttttcaacagaatcggtggaatgaatacacccctgatcaaaCGCTAACAcaattcactttcatagcagccatatAAAAACGGCAAGATCACTTTGCTCATTGTATACTATGAATTCggaaagttttcacaccccttgaccttttcctcattttgttacgttacagccttctaaaATGGACAAATTGTTTtttgcctcatcaatctacacacactatgccataatgacaaagcaaaagcaggtttttagatttttttgcaaatgtattaaaaataaaaaactgatcacattta
>XM_036983190.1
ATTACAGCGCTCACCTACATGCGGGCTCGTTATTGGTGGAGCCATATCTGTGTCCTATTGGCTCTTCCACCCACACCGTAATCAGAAGCGCGAGATGGACAGAAGTTGAGATTACATTTTATGAGCGTCCTCAACAAACGACCAGACTCCAAAGCAGGCCTCATCCAAAGGCCCTGAGGAACCCGAGGTACCGGAGGACAATCCTAGCAAGACCCAGCAGCTGAAGAAGATCTTTAAGGAGTACGGAGCTGTAGGAGTCTCCTTCCACATATGTATGTCCCTCATGTCTCTGGGCATGTTCTACCTCGCTGTGTCCAGTGGGATCGACATGGCTGCTATCCTGTACAAGATAGGATTCAGTGAATCTCTGGTTCAGTCCAAGTTGGCGGCGGGTACCAGTACGTTTGTCCTGGCGTACGCCATCCACAAGCTGTTTGCTCCGCTCCGTATCAGCATCACTGTGATATCAGTGCCTCTTCTTGTACGATACCTCAGAAAGAGTGGCCTCTTCAAGACACCCAACTCACCTACACACTGAGTGGCTGAGACCCCAACCTCCACTAACTTCGATAACTGAGACTTTCCAAATATGACCATTACCATTTCTGGAATCAAGAGGGAATAAGTGTGACAAATTCTTCCAACCATCCCTAGTTTTTCAACTGGAATTTCTGCAGGAGATAAAAACAGATCCAACCGAGGCTGACTTTTAACCCACCTGTAGATCAGTGGCGGTctgtgccgtttaagatgagcgAGGatgattttaaaaatgtatttcttatgagcatggccttatttctattgcagcattttggatgactgtcattcatatttcattcacccagttcaatataACAGTGATGGGTTAAGGCTACTACAATAAGGCTACTTACTACAATCCATCATGAGATTACTACAACCTATCTTATGAGAAGTTTACATTGTGAACTTTCATCAAGATCATTTTTAGTAATCAAGGTGAGACTgtaacacattcaatactgccgtGAACTCTcgtgcctgcatctagctgatctaggttgTAATCATTAGtcaaacagttgcaaacgagagtttctattcgacaaattcaggtatgtttatccccattccatttaagaaatgtttttcaacagaatcggtggaatgaatacacccctgatcaaaCGCTAACAcaattcactttcatagcagccatatAAAAACGGCAAGATCACTTTGCTCATTGTATACTATGAATTCggaaagttttcacaccccttgaccttttcctcattttgttacgttacagccttctaaaATGGACAAATTGTTTtttgcctcatcaatctacacacactatgccataatgacaaagcaaaagcaggtttttagatttttttgcaaatgtattaaaaataaaaaactgatcacattta
>XM_036983188.1
CTTATTATTACAGCGCTCACCTACATGCGGGCTCGTTATTGGTGGAGCCATATCTGTGTCCTATTGGCTCTTCCACCCACACCGTAATCAGAAGCGCGAGATGGACAGAAGTTGAGATTACATTTTATGAGCGTCCTCAACAAACGTtagttttatttttaattaatcaGCTTTACAGTCCGTGCTTTGTTTGTAGTTTGAGAGACATGTTTGTGTGTCGAGGAGCGAGGCTGTCGGCGAAGGCTTTGGAGCAGGGTTTCAACTCCACGACAGGGGCACAATTTAAAACGAACAGACTAACGGTAGTTGACGTTACCTGCACTTTGCCATTACGTAACATCCATGCATTCAAATGCTCCCGAGCTTTTTGTGGATATTTTGTGGCACTTTCGCCTGATGGAAAGCGAGAAAAAAGGGAGAAGGATATGTTTTCCGTGAAGAACCGGGACTCTGTTCGTTTCATAATCACGCATCAGCAACAATTAACTCGAGTAAATTCGTTTTCTTTAAATCTCTCCAACAAAAGTAATGGTAAAAGCTTATTCAACCGTACACATAATGTCACTAGCTCAACTCTTTATCGGACGAATGGAGGCCAAAGCTGGCAGAAGAAACAATACGTAGATGCACTTGAATCTGTGTTTACGTCTGGCGCCAATGTCTGCAATCATCGATTATATCCCACAATGACTGTGCAAATGAGACCTTTTTCCTCTGTTGCTGTTGCTCCCAAACTGGTGGAGGACTCGCCCGCAGATCACGAAGTGatgaacgtggtgtcttcaggcatttggaaattgctcccaaggatgaaccaaacttctggaggtctacaatttcccatgatgtcaagcaaagaggctctgagtttgaagataggccttgaaatacatccacagGACCAGACTCCAAAGCAGGCCTCATCCAAAGGCCCTGAGGAACCCGAGGTACCGGAGGACAATCCTAGCAAGACCCAGCAGCTGAAGAAGATCTTTAAGGAGTACGGAGCTGTAGGAGTCTCCTTCCACATATGTATGTCCCTCATGTCTCTGGGCATGTTCTACCTCGCTGTGTCCAGTGGGATCGACATGGCTGCTATCCTGTACAAGATAGGATTCAGTGAATCTCTGGTTCAGTCCAAGTTGGCGGCGGGTACCAGTACGTTTGTCCTGGCGTACGCCATCCACAAGCTGTTTGCTCCGCTCCGTATCAGCATCACTGTGATATCAGTGCCTCTTCTTGTACGATACCTCAGAAAGAGTGGCCTCTTCAAGACACCCAACTCACCTACACACTGAGTGGCTGAGACCCCAACCTCCACTAACTTCGATAACTGAGACTTTCCAAATATGACCATTACCATTTCTGGAATCAAGAGGGAATAAGTGTGACAAATTCTTCCAACCATCCCTAGTTTTTCAACTGGAATTTCTGCAGGAGATAAAAACAGATCCAACCGAGGCTGACTTTTAACCCACCTGTAGATCAGTGGCGGTctgtgccgtttaagatgagcgAGGatgattttaaaaatgtatttcttatgagcatggccttatttctattgcagcattttggatgactgtcattcatatttcattcacccagttcaatataACAGTGATGGGTTAAGGCTACTACAATAAGGCTACTTACTACAATCCATCATGAGATTACTACAACCTATCTTATGAGAAGTTTACATTGTGAACTTTCATCAAGATCATTTTTAGTAATCAAGGTGAGACTgtaacacattcaatactgccgtGAACTCTcgtgcctgcatctagctgatctaggttgTAATCATTAGtcaaacagttgcaaacgagagtttctattcgacaaattcaggtatgtttatccccattccatttaagaaatgtttttcaacagaatcggtggaatgaatacacccctgatcaaaCGCTAACAcaattcactttcatagcagccatatAAAAACGGCAAGATCACTTTGCTCATTGTATACTATGAATTCggaaagttttcacaccccttgaccttttcctcattttgttacgttacagccttctaaaATGGACAAATTGTTTtttgcctcatcaatctacacacactatgccataatgacaaagcaaaagcaggtttttagatttttttgcaaatgtattaaaaataaaaaactgatcacattta
>TU687661
GCTACTTACTACAATCCATCATGAGATTACTACAACCTATCTTATGAGAAGTTTACATTGTGAACTTTCATCAAGATCATTTTTAGTAATCAAGGTGAGACTgtaacacattcaatactgccgtGAACTCTcgtgcctgcatctagctgatctaggttgTAATCATTAGtcaaacagttgcaaacgagagtttctattcgacaaattcaggtatgtttatccccattccatttaagaaatgtttttcaacagaatcggtggaatgaatacacccctgatcaaaCGCTAACAcaattcactttcatagcagccatatAAAAACGGCAAGATCACTTTGCTCATTGTATACTATGAATTCggaaagttttcacaccccttgaccttttcctcattttgttacgttacagccttctaaaATGGACAAATTGTTTtttgcctcatcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983189.1 False 2040 mRNA 0.43 3 37756561 37789840
XM_036983190.1 False 1421 mRNA 0.42 3 37756561 37789843
XM_036983188.1 False 2181 mRNA 0.43 4 37756561 37789849
TU687661 True 444 lncRNA 0.36 1 37756651 37757094

Neighbor

gene id symbol gene type direction distance location
LOC110527700 NA coding downstream 42415 37710179 ~ 37714146 (-)
LOC110527696 LOC106582672 coding downstream 508106 37239565 ~ 37248455 (-)
gli1 LOC106566129 coding downstream 547609 37087748 ~ 37208952 (-)
LOC110527694 LOC106582668 coding downstream 717752 37031274 ~ 37038809 (-)
LOC110528947 LOC106582664 coding downstream 898417 36738691 ~ 36858144 (-)
LOC110527702 ppp1r16b coding upstream 13965 37803814 ~ 37932459 (-)
LOC118965380 NA coding upstream 145522 37935371 ~ 37936376 (-)
LOC110527705 LOC106582679 coding upstream 273440 38063289 ~ 38079634 (-)
LOC110527706 LOC105030694 coding upstream 303354 38093203 ~ 38096522 (-)
LOC110527710 LOC106582681 coding upstream 380334 38170183 ~ 38199500 (-)
G603713 NA non-coding downstream 2421 37753725 ~ 37754140 (-)
G603714 NA non-coding downstream 2884 37753406 ~ 37753677 (-)
G603357 NA non-coding downstream 14768 37741541 ~ 37741793 (-)
G603347 NA non-coding downstream 22266 37734083 ~ 37734295 (-)
G603338 NA non-coding downstream 28213 37728052 ~ 37728348 (-)
G603752 NA non-coding upstream 66669 37856518 ~ 37913536 (-)
G603836 NA non-coding upstream 202510 37992359 ~ 38002257 (-)
G603931 NA non-coding upstream 300991 38090840 ~ 38091169 (-)
G603932 NA non-coding upstream 301538 38091387 ~ 38091667 (-)
G601245 NA other downstream 1995291 35760699 ~ 35761270 (-)
G600881 NA other downstream 2701333 35001880 ~ 35055228 (-)
G600872 NA other downstream 2789775 34965447 ~ 34966786 (-)
G600721 NA other downstream 3141686 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 3981947 33770050 ~ 33774908 (-)
G604485 NA other upstream 799306 38589155 ~ 38597519 (-)
G604484 NA other upstream 799568 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 1273156 39063005 ~ 39123578 (-)
G606135 NA other upstream 2049042 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 2433706 40135298 ~ 40275270 (-)

Expression


Co-expression Network