LOC110527702 (ppp1r16b)


Basic Information

Item Value
gene id LOC110527702
gene name ppp1r16b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 37803814 ~ 37932459 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609156.2
TGCCTGCCCAGCCACGGTGGCTTTTCTTCTGTGTCGCTACTAGTTAGCCACAAGACGCTAAACGTTGCTGCAGGCTTATCCCAGTGAGTGAAATTGGAACTAATGAAAACCAAGTAACAGTCGcgGGTGGTCTAGTCACAACTGTCctggtggtgaggatgatgatgatgggagTTGGCTACTACAGCCAAATGTGCAGCCCCCCACGCTAGTACCAGTCTACAACCCCTGGTCCCCCTTTGAGCCCTGGTCCCACCTGTCCCCACCATGGCCAACCACCTGGAGCTTCTGAATGAACTGCAGCAGCTGGATAAGGTGCCTAGCCTGGAGCGACTAAGGGCCGCCCAGAAGCGCCGCACGCAGCAGCTGAAGAGATGGGCAGtctatgagaaggagatgcaGAACAAGAAGCGCAAGGCGGACAAGAGGAGGAACACCAATCATGCCGCAGCCATGGAGGCCAAACGACATGTATCGTTTGCAGCTAATGTGGCACTATTAGAGGCCTCGGCACGGAACGACCCTGACGAAGtaCGTTACCTGCTGAAGAACAATGTCAGTCCAGACTTGTGCAACGAGGATGGACTCACTGCCCTACACCAGtgcTGTATTGATAACTATGAGGAGATGGTAAAGATCCTGTTGAATCGTAGTGCCAGTGTAAACGCCCAGGACAATGAACTTTGGACCCCGCTACATGCTGCTGCCACCTGTGGACATGCAGGACTGGTCAAGGTCCTCATACAACATGGAGCAGACCTGTTAGCTGTGAACTCTGACGGCAACATGCCCTATGACCTGTGTGAAGATGACCCTACCCTGGACATCATCGAGACCGCAATGGCAAATCGAGGCATCACCCAGGAGATGATCAACGAGACCCGGGCGTCTGTAGAgaggagaatgatgggagatatCCAGGAGCTGCTGACTGCGGGAGAGGACGTCAACCGCCACGACTCACAAGGAGCTACTCTGCTCCACATTGCAGCAGCTAATGGCTACGTCCAGGGTGCAGAGCTGCTGCTGGAGGGAGGGGCCAGGATGGACCTGAGAGACACTGACGGATGGCAGCCGCTCCACGCCGCAGCCTGCTGGGGTCAGATGCATGTAGCAGAGCTGTTGGTTTCTCACGGTGCCAGTCTCAATGCCAAGACCTACCTAGAGGAGACACCCATTGACCTGTGCGAGGACGAGGAGTTCCGTGCCATCCTGTTGGACCTGAAACACAAACACGATATTATCATGAAGTCTCAGCTCAAACACAAGACCTCCCTGTGTAGGAGGACGTCCAGCGCAGGCAGCCGTGGAAAAGTGGTGCGGCGGGCCAGCTTGTCTGACAGACACAACCTTCGTGTGAAGGAATATGAGACCGAGGCCATCGTgtggagaggtgggagggaaggagggagggaggagcaggagaaagagaaggaggcaGACCAGGAGAACAGCCATCTGATCAATACGACTGTTACTATGGTGATTCCGGTGAAGCCAGCAGCGGAGAGGCCCAAGCTCCAGAAAATCCTTAAAGATCCTAGTGGCATCATCAAACAAAACGGCATCATCTCCACGACGACGTCTACGCCCGCTCCCAGTCAGTCGCCGGCCACCAATGGTGAGGCTCCATCCCCTGACACGAAGAGTATGGCGTCCATTCCGCTGCCCGAGGACTCTTCCTCCTTGCCCAGGGAGCGTGCTCAGACACTATCAGAACTTAAAAAGCAGAGGTCGGCCGCCAAGCTGCTCAACCACCCTCTCCTCAACGGTCACCTTGGAAACGGCTCCACAGAAACCGCCGAGCCCCAGAGCCCTGTGGACTCCCGCATGCCGCTGGTCTCCTCCAATGGCAGCGCAGTTTACTACACCCCGGCCAGCGGGGACCCACCCATCCTCAAACTGAAACAGCCAATAGATGATGAGGAACTAAAGGGGCACAGCTGCTGCTGTGTCTCCTAGGGAGGGGTGGAGGTCACCCCAAGACACTGAtttaaggtcaggtttactaTGTTCTCCTCCAGtgcattaaggttagggttcgagGAGGGTAAACTGACCGTAGATCTGTGTAAAAGGGTAACTTCTTCCCGGATAGAGTGTACCAGAGCAGGATGGTCATGTGACTGAAGCAGGAAGAGATTGCACAGCGGGACACCAAAATGCAGAGCCAAGGTCCAAGAATGCAATAGGAGTGGAGCTGGTTCAGCCAGGTGATTGGTTACCTGCCCCTACTCCCTAGTTTTCCTACCCACTGCTGTTTCAACTCCTGGCCACACCAGTATGGAGGATAGGATAACCTTAGAGAAATCGAGTAAAAGATGACTTGGGGAAGAGCCAAACGGTGATAGCTTGTGGTCGATTGACAGGGCAGGTATGTGGTGGACACTGTTGATCTCCCTATGGAGTGGGTGGCTGAGATGGTCCATAGACCTTAAGAGTATGGAGGATTCCCCTACCCCCCCGGAGAACGGGCATGCCACTGTGATAGATTGTGGTTGATGTAGAGGGTAAGGAAGTGGAACGAGATGGCCCTTATCCCCTATGAGGAGAGAACTCTGGTGCCCTATAAAGGGATGGATGCCGAGGCAGCGTGCTCTCCCATGTTAAGCGTATGTGGTGTCTTACTTTTGACTGAATCACTGTTTTCAAACCACATTCTTACTTTATCCACTGTTTCTGAAATTTCTTTGAGGAAAAAATACTCCAACATATCAGAatactctctctgtgtttttactGAAACAAAGAGGGATACTCTTTCTTAAGACGTATTCTTGTTCAAATGCTGACTATTTCAGAAAAGGGAAGGAATGGTCTATaccagggtggcaggtagcctagcggctagcgcgttggaccagtaactgaaaggctgctggtttgaatccccgagccaacaaggtgaaaaaaatctgtcgatgtgcccttgagcaaagcacttaaccctaattgcccctgtaagttgctctggataaaagcatcttctacatgactaaaatgtaaataacaaAACAGAACAGTATTACAGTCAACGATCTATCTGCTCCTGTGAAGAAGGAGGATTGGAGCACTGCACTATAGACATTTGAAACAATGCAGCATTAAACTCATCATCCGTCCTGATCCGAACTTGCATCGATAAAGGTGGTAAAACGGTGTTTGATATGCCCATGTCTTTTTGCTTATTTGTAGGTAATTTAAGCAAAAATAATTGCTTGAAAATACAGTgcatacggaaagtattcagtccccttgactttttccacattttgttacgttacagacttattataaaatgtattaagtaaatgaaaaatcctcatcaatctacacacaata

Function

symbol description
ppp1r16b Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in establishment of endothelial barrier; regulation of protein dephosphorylation; and regulation of sprouting angiogenesis. Predicted to be active in plasma membrane. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B).

NR:

description
protein phosphatase 1 regulatory inhibitor subunit 16B

GO: NA

KEGG:

id description
K17459 PPP1R16B, TIMAP; protein phosphatase 1 regulatory inhibitor subunit 16B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609156.2 True 3342 mRNA 0.51 11 37803814 37932459

Neighbor

gene id symbol gene type direction distance location
LOC110527701 LOC102797503 coding downstream 13965 37756561 ~ 37789849 (-)
LOC110527700 NA coding downstream 89668 37710179 ~ 37714146 (-)
LOC110527696 LOC106582672 coding downstream 555359 37239565 ~ 37248455 (-)
gli1 LOC106566129 coding downstream 594862 37087748 ~ 37208952 (-)
LOC110527694 LOC106582668 coding downstream 765005 37031274 ~ 37038809 (-)
LOC118965380 NA coding upstream 2912 37935371 ~ 37936376 (-)
LOC110527705 LOC106582679 coding upstream 130830 38063289 ~ 38079634 (-)
LOC110527706 LOC105030694 coding upstream 160744 38093203 ~ 38096522 (-)
LOC110527710 LOC106582681 coding upstream 237724 38170183 ~ 38199500 (-)
LOC110528948 p38a coding upstream 281572 38214031 ~ 38260322 (-)
G603713 NA non-coding downstream 49674 37753725 ~ 37754140 (-)
G603714 NA non-coding downstream 50137 37753406 ~ 37753677 (-)
G603357 NA non-coding downstream 62021 37741541 ~ 37741793 (-)
G603347 NA non-coding downstream 69519 37734083 ~ 37734295 (-)
G603836 NA non-coding upstream 59900 37992359 ~ 38002257 (-)
G603931 NA non-coding upstream 158381 38090840 ~ 38091169 (-)
G603932 NA non-coding upstream 158928 38091387 ~ 38091667 (-)
G601245 NA other downstream 2042544 35760699 ~ 35761270 (-)
G600881 NA other downstream 2748586 35001880 ~ 35055228 (-)
G600872 NA other downstream 2837028 34965447 ~ 34966786 (-)
G600721 NA other downstream 3188939 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 4029200 33770050 ~ 33774908 (-)
G604485 NA other upstream 656696 38589155 ~ 38597519 (-)
G604484 NA other upstream 656958 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 1130546 39063005 ~ 39123578 (-)
G606135 NA other upstream 1906432 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 2291096 40135298 ~ 40275270 (-)

Expression


Co-expression Network