LOC110527705 (LOC106582679)


Basic Information

Item Value
gene id LOC110527705
gene name LOC106582679
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38063289 ~ 38079634 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983195.1
gttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcagTAAACCTCAGCTGCTTCAGGGAGTATATGCCGTGGGCTTCAACCGCCCCTCCAAAATCCAAGAGAATGCTTTACCCTTGATGCTCGCAGAACCACGGCTGCTTTTGTCCTGGCCATGCTCAGTCACGTCGACCCCAACAACAAGTTTCCTCAGtgtctgtgtgtctcccaCTTATGAGCTGGCCCTACAGACAGGGAAGGTCATTGAGCAGATGGGGAAGTACTCCTCAGAGGTCAAACTAGTCTACGCCATCAGAGGAAACAAACACAAGGCTGTGGGCTGGCTGGCAGGTGAGCTGTCCCGGGAGGGCCACCAGGTGGCGCTGCTCAGTGGGGAGATGCAGGTGGAGCAGAGAGCTGCTGTCATCGACCGCTTCAGAGAAGGAAGGGAGAAGGTCCTGGTCACCAACAACGTCTGCGCCAGAGGTATCGACGTGGAGCAGGTTTCCGTGGTGCTAAACTTTGACCTGCCGGTGGACAGAGACGGTGACCCAGACAATGAGACGTACCTGCACCGGCTTGGCCGCACAGGTCGTTTTGGGAAGAGGGAATTGGCCATCAACATGGTGGACAGCAAGTTCAGCATGAATGTCCTCAACAAGATCCAGGATCACTTCAATAAGAAAATTGAGAAGCTGGACACAGATGATCTGGATGAGATTGAAAAAATTGCTAGCTGAAGAGAGTACGTGTACGTCTACAACCTGACTGCTACAgccttagcccccccccccctcttaccTGCCACACCAACTCCTCAGACTCctcctccgccccccccccccccccccccccccccccccaaccccacaCTGACTGTACTCCTACAGTGTTTTATAGTTTTATTTTcaagttggagagagagaagtagagcaaAGGCCACAAACACAGCTATAATGTTTACATGTGGTGGAAATGTTTTATATCTCTGGTATTTTTAATAAGTCTCTGAAATGTATGGGTTTCACTCTTTGTACTTCTTAATGAATAAAGTCTGTAATATTAGGGAATATTGTCTAAGTGTGTATTGTAATGCCATGGTACAATGGTAGGCTTGGAGCCAAATGGTGGAGTGGAAACAAGTGCCATCATTTTACAGAGATTTTTGtataaaggcccagtgcagttgTGATATTCCTGTGTTTTATAATATTTCCACCCTgcggttggaataatactgtaaaaTTGTGAAAAATGCGAATGACTTTTTAGTGTAAGAGCCTTTTGGAAAGACTACCTGAAATTACAGCCTGTTTTTGTGGGATGTAGTTTTCACCATACGgcaaattagttaatagaccgattttaaagagttccaaacctctgttAATAACATCTCATTtacagttttcccctccccaactCAGACCAGGGTTTCTCAAACCCTGTCCCCAGGTGCACTTTTAGTGTTTTGCCCAAGCAATAcatagctgattcaaataatccaagcttgatgatgagttggttatttgaatcagctgtgtagtgcttggggaaaaaaactaaatgtgcaccCATCACCGTAAGACTTAATTGTTTCTGGAATTTGATATTAGGGTAAAATGGCTACAGTTGACCTTTAACCCAGTCCCTGATTACCAATATGAATGAGATCTCCAGGGAAGCATAGTGCATAATCAGGAAAATTAGCTGAATGCTTTAAGATTTTTGTTATACGTGAATGCTTTGCAATGAAAACAGGAATGCTGATAAGTAGCACAAAGAGTGAAATAATGTGGTGTTTTGAGAGGTTTTACAAAGATACTTTGGTGATTGTTGGGTTCAGGAGTATATGCAAACTTGTATCAACCTTTCATTGTGCCTCTAGTACAGTAAAGTGTTCAAATCACAACCTCTGATAGTTAGTTTCAGGTTTTTCCCTCAATGCGTACTTCTATGGCAAAAGGGATATGGAGAAAACACTACTTTTACTActatttttttatccaataaaatacagttaaataaatgtaaatgcaacaatttcaaagattttactaaattacagtttatataagga
>XM_021609159.2
ATTTTGCTCGCTCTTGTCTCATTCTCCATTCAGACCTTTTTACGGACGCACAGGTGCATTCCAGAGCGGTCCTCACTAGTTACCACTGACCTGACACAAAGTCATACAACCCAACTAATTCTACAAATACTTTTCTTAAAATGAGATTTTATTAAACCTAACCGTGAATGAAGACCAAAAATCGATgtggactttgtggctgtggtaactagtggaaaccgtcTGGACCCGAATCCCGGCACGTCATTGTACAATTAGTTTATTTTTCAGACTTTGGAAACACTTTCCTAGCTCAGTTGTCTGTTCGGTGTTGAAACTAGAGGGGTCCCGGTGGTGACTGAACAACCGCTGACATCATGGCAACGGACTCCTGGGCCCAGGCTGTGGGCGAACAAGAAGCCGCGGCGGAATCGACGCAGCAAGCACGACAACAACAACCGCAGCAGCAAGTGCTTCAACGCCTGCAAAGATGGAAGGAGGCGAGGGAAACAAAACAGAGGAGAAAGACGACAAAGTAAACCTCAGCTGCTTCAGGGAGTATATGCCGTGGGCTTCAACCGCCCCTCCAAAATCCAAGAGAATGCTTTACCCTTGATGCTCGCAGAACCACGGCTGCTTTTGTCCTGGCCATGCTCAGTCACGTCGACCCCAACAACAAGTTTCCTCAGtgtctgtgtgtctcccaCTTATGAGCTGGCCCTACAGACAGGGAAGGTCATTGAGCAGATGGGGAAGTACTCCTCAGAGGTCAAACTAGTCTACGCCATCAGAGGAAACAAACACAAGGCTGTGGGCTGGCTGGCAGGTGAGCTGTCCCGGGAGGGCCACCAGGTGGCGCTGCTCAGTGGGGAGATGCAGGTGGAGCAGAGAGCTGCTGTCATCGACCGCTTCAGAGAAGGAAGGGAGAAGGTCCTGGTCACCAACAACGTCTGCGCCAGAGGTATCGACGTGGAGCAGGTTTCCGTGGTGCTAAACTTTGACCTGCCGGTGGACAGAGACGGTGACCCAGACAATGAGACGTACCTGCACCGGCTTGGCCGCACAGGTCGTTTTGGGAAGAGGGAATTGGCCATCAACATGGTGGACAGCAAGTTCAGCATGAATGTCCTCAACAAGATCCAGGATCACTTCAATAAGAAAATTGAGAAGCTGGACACAGATGATCTGGATGAGATTGAAAAAATTGCTAGCTGAAGAGAGTACGTGTACGTCTACAACCTGACTGCTACAgccttagcccccccccccctcttaccTGCCACACCAACTCCTCAGACTCctcctccgccccccccccccccccccccccccccccccaaccccacaCTGACTGTACTCCTACAGTGTTTTATAGTTTTATTTTcaagttggagagagagaagtagagcaaAGGCCACAAACACAGCTATAATGTTTACATGTGGTGGAAATGTTTTATATCTCTGGTATTTTTAATAAGTCTCTGAAATGTATGGGTTTCACTCTTTGTACTTCTTAATGAATAAAGTCTGTAATATTAGGGAATATTGTCTAAGTGTGTATTGTAATGCCATGGTACAATGGTAGGCTTGGAGCCAAATGGTGGAGTGGAAACAAGTGCCATCATTTTACAGAGATTTTTGtataaaggcccagtgcagttgTGATATTCCTGTGTTTTATAATATTTCCACCCTgcggttggaataatactgtaaaaTTGTGAAAAATGCGAATGACTTTTTAGTGTAAGAGCCTTTTGGAAAGACTACCTGAAATTACAGCCTGTTTTTGTGGGATGTAGTTTTCACCATACGgcaaattagttaatagaccgattttaaagagttccaaacctctgttAATAACATCTCATTtacagttttcccctccccaactCAGACCAGGGTTTCTCAAACCCTGTCCCCAGGTGCACTTTTAGTGTTTTGCCCAAGCAATAcatagctgattcaaataatccaagcttgatgatgagttggttatttgaatcagctgtgtagtgcttggggaaaaaaactaaatgtgcaccCATCACCGTAAGACTTAATTGTTTCTGGAATTTGATATTAGGGTAAAATGGCTACAGTTGACCTTTAACCCAGTCCCTGATTACCAATATGAATGAGATCTCCAGGGAAGCATAGTGCATAATCAGGAAAATTAGCTGAATGCTTTAAGATTTTTGTTATACGTGAATGCTTTGCAATGAAAACAGGAATGCTGATAAGTAGCACAAAGAGTGAAATAATGTGGTGTTTTGAGAGGTTTTACAAAGATACTTTGGTGATTGTTGGGTTCAGGAGTATATGCAAACTTGTATCAACCTTTCATTGTGCCTCTAGTACAGTAAAGTGTTCAAATCACAACCTCTGATAGTTAGTTTCAGGTTTTTCCCTCAATGCGTACTTCTATGGCAAAAGGGATATGGAGAAAACACTACTTTTACTActatttttttatccaataaaatacagttaaataaatgtaaatgcaacaatttcaaagattttactaaattacagtttatataagga
>TU687813
CGTCATGGTATCGACTTGAGGGGGAATATGAATGGCTGCGACCCTAACCAAAGATAATTATTTTGGGaagtaatacggtcggcatttgaggTATTCTCGggcgggtgagcagaaggacttgagtttctcTGTTATCAcacctcgccctgagctcgtcaactttattatccagagaatgaacattagcgagtaatatactcggaagcggtgggtggtgtgtgcaccacctgagtcggactagaattCCACTCTGAGTATCTCTCCTCTGCCGGCGGTGTTTTTGGTCAgcttctggaatcagttcaattgccctgggggatACTAACAAAGGATCTGATTTGGGAAAGTCCTATTCCTTATCGTAATTCTGGTGAGTAGCCGcctctctgatatccaaaagttatttccagctgtatgttataacacaaaaaaatatgggctaataatgtaagaaataacacaaaaaaaaaaaaaaaatcctaagaACTAGAAGCACAGCAGCCCTATCTGTCGGCGCCAAATGATCTGGCCATCCACCCGTTCTCATCTGTCTTTCTGACCTTCCCTCCAGGTATCGACGTGGAGCAGGTTTCCGTGGTGCTAAACTTTGACCTGCCGGTGGACAGAGACGGTGACCCAGACAATGAGACGTACCTGCACCGGCTTGGCCGCACAGGTCGTTTTGGGAAGAGGGAATTGGCCATCAACATGGTGGACAGCAAGTTCAGCATGAATGTCCTCAACAAGATCCAGGATCACTTCAATAAGAAAATTGAGAAGCTGGACACAGATGATCTGGATGAGATTGAAAAAATTGCTAGCTGAAGAGAGTACGTGTACGTCTACAACCTGACTGCTACAgccttagccccccc
>TU687814
CAGGTGGAGCAGAGAGCTGCTGTCATCGACCGCTTCAGAGAAGGAAGGGAGAAGGTCCTGGTCACCAACAACGTCTGCGCCAGAGGTATCGACGTGGAGCAGGTTTCCGTGGTGCTAAACTTTGACCTGCCGGTGGACAGAGACGGTGACCCAGACAATGAGACGTACCTGCACCGGCTTGGCCGCACAGGTCGTTTTGGGAAGAGGGAATTGGCCATCAACATGGTGGACAGCAAGTTCAGCATGAATGTCCTCAACAAGATCCAGGATCACTTCAATAAGAAAATTGAGAAGCTGGACACAGATGATCTGGATGAGATTGAAAAAATTGCTAGCTGAAGAGAGTACGTGTACGTCTACAACCTGACTGCTACAgccttagccccccc

Function

NR:

description
ATP-dependent RNA helicase DDX19A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983195.1 False 2067 mRNA 0.44 7 38063289 38077146
XM_021609159.2 False 2534 mRNA 0.45 8 38063289 38079634
TU687813 False 875 lncRNA 0.47 2 38064579 38065697
TU687814 True 389 lncRNA 0.52 3 38064579 38070347

Neighbor

gene id symbol gene type direction distance location
LOC118965380 NA coding downstream 126913 37935371 ~ 37936376 (-)
LOC110527702 ppp1r16b coding downstream 130830 37803814 ~ 37932459 (-)
LOC110527701 LOC102797503 coding downstream 273440 37756561 ~ 37789849 (-)
LOC110527700 NA coding downstream 349143 37710179 ~ 37714146 (-)
LOC110527696 LOC106582672 coding downstream 814834 37239565 ~ 37248455 (-)
LOC110527706 LOC105030694 coding upstream 13569 38093203 ~ 38096522 (-)
LOC110527710 LOC106582681 coding upstream 90549 38170183 ~ 38199500 (-)
LOC110528948 p38a coding upstream 134397 38214031 ~ 38260322 (-)
LOC110527712 LOC106593203 coding upstream 184737 38264371 ~ 38269527 (-)
LOC110527714 LOC103464903 coding upstream 224396 38304030 ~ 38499669 (-)
G603836 NA non-coding downstream 61032 37992359 ~ 38002257 (-)
G603752 NA non-coding downstream 149753 37856518 ~ 37913536 (-)
G603713 NA non-coding downstream 309149 37753725 ~ 37754140 (-)
G603714 NA non-coding downstream 309612 37753406 ~ 37753677 (-)
G603931 NA non-coding upstream 11206 38090840 ~ 38091169 (-)
G603932 NA non-coding upstream 11753 38091387 ~ 38091667 (-)
G603938 NA non-coding upstream 20758 38100392 ~ 38100646 (-)
G603956 NA non-coding upstream 50442 38130076 ~ 38130550 (-)
G601245 NA other downstream 2302019 35760699 ~ 35761270 (-)
G600881 NA other downstream 3008061 35001880 ~ 35055228 (-)
G600872 NA other downstream 3096503 34965447 ~ 34966786 (-)
G600721 NA other downstream 3448414 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 4288675 33770050 ~ 33774908 (-)
G604485 NA other upstream 509521 38589155 ~ 38597519 (-)
G604484 NA other upstream 509783 38584293 ~ 38639400 (-)
LOC110527723 LOC106582696 other upstream 983371 39063005 ~ 39123578 (-)
G606135 NA other upstream 1759257 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 2143921 40135298 ~ 40275270 (-)

Expression


Co-expression Network