LOC110528948 (p38a)



Basic Information


Item Value
gene id LOC110528948
gene name p38a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38214031 ~ 38260322 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036983204.1
TGTCTGTAAGAACACTAGGATCTCAGTTCTCAGTTGACTAACTATTGTTGcacccataaaaatctgtcagtttaagctagagatatctgttttgttgcatgggctgcgtctcaatccacttaATCAGCCTATGTCGGCCTTCCACATATGTGGTGGACGTTTTGGCCTActaactaatatgacccctctatagaaagatgagactctcacaaagCCCAGTAGGACTGGTATGAAGGTAACCTGGTACCggtttaaaaaatgaatggaagtcctcatctttcttatatctcctagatataggacagacacttccaaaccttattccttatgaaacattttttttctctgtTTTTCCATAtcttagcttagtagaacccataAAGATGGATGGATGATTTTTCAGCAATAATGCATCCAGGTGAAACAGGGGATGAACTTCAGAAGCTCGTCGTATGACGTGAAGTCGGGGCTGAAGATAGCGGTGAAGAAGCTGTCGAGGCCGTTCCAGTCCGTCATCCACGCTAAGAGGACCTACAGAGAACTACGACTCCTCAAACACATGAAACACGAGAACGTGATCGGCCTGTTGGATGTGTTTACGCCCGCTACCAGCCTAGAGGAGTTCAACGATGTGTACCTGGTGACCCACCTGATGGGGGCGGACCTCAACAATATTGTCAAGTGTCAGAAACTGACGGACGACCACGTTCAGTTCCTCATATACCAGATCCTCCGGGGTCTcaagTATATCCATTCAGCAGACATCATCCACAGAGATCTGAAGCCCAGTAACTTGGCAGTGAATGAGGACTGTGAGCTCAAGATCCTGGACTTTGGTTTGGCGAGACACACGGATGATGAGATGACGGGTTACGTAGCAACCAGGTGGTACCGCGCCCCAGAGATCATGCTTAACTGGATGCACTACAACATGAcagttgacATCTGGTCGGTGGGCTGCATAATGGCGGAGCTGCTAACCGGAAGGACGTTATTCCCCGGCACCGACCATATTAACCAGCTGCAGCAGATCATGAGGCTGACAGGTACACCCCCGGCCTCTGTCATTAGCCGGATGCCCAGCCACGAGGCCAGAAACTACATTAACTCCCTTCCCCAGATGCCCAAGAGGAACTTTGCTGATGTGTTCATTGGCGCTAACCCACTAGcGGTGGATCTGTTAGAGAAGATGTTGGTTCTGGACACTGATCAGCGGATCACAGCGTCAGAGGCCCTGGCCCACCCCTACTTCTCCCAGTACCACGACCCAGACGATGAACCAGAGTCTGAGCCATACGACCAGAGCTTTGAGAGCCGTGAGCTGGAGATAGAGGAGTGGAAAAggtTGACCTATGAGGAGGTTTGCAGCTTCGAGCCCCTGCCATTCGACGGAGACGAGATGGAGTCCTGAGGGAACTAGGGTGATGTCATTGATAATCTTCTGCCTTCTCCTTCTCTTATGGAATTGTGTTGAGGAGGAAGTGGCATGTAGACATTGAACTCAGACCAGTTATGCGTTTCCTCCCCTAATGGTTTAGGTTAGGATCTGGGAGTAGGTTGAGCCTATCTTAGATCAGAATTTAGAGGCAACTTCCTCCCAGAGCACACAACCTTGTGTGAGGACTATCAACTCTCCGGACTatttaacaaacaaacaaatgggAAACCACGACATTCAAGTGTCTGTCGTCGTTCATTTCTGGGGTCATTCTCGGGTTAGAGATCAAGGGTTAAAGGTGACCGACCCCACCCTCCCGCTTGCTGTTTTATATTATATTGTTTATGTTTTGGTTTGTGGGCCGAACTGGGGAAATTACTTTGTAATATtgtatctactgtttgtgtgtttagAATATCTGTTAAGTTAGCTTCAGATTTTCACATGATTTGCTAAAAAGTATCTTATTTAATAAATTCCTGGAAATGGTACTCAGTTCAATATGGCAAAAACAATCAACCACATTATTTAATTTAACAAACCACTGGTACCTTCAAACATTTATTTATGACTTTAGGTTGGTAGTGTATAGCCAGATGTTATTTTACGTCCTTTTGGATCGAATTCAGTAGGAAACCCAACAGTGTAAATCACCTCTGCCCTTCTCTGAAAAGTTCTGTCTCCACAGTCAAACTGTACTCTGTTGTTATGCCTGCCAGTGttttacatatgtaaataaggctGCACTCTTGTAAATAAATGATACTATGCACACAGTAA
>XM_036983203.1
ctgtggacAAACTGGcttagtagaacccataAAGATGGATGGATGATTTTTCAGCAATAATGCATCCAGGTGAAACAGGGGATGAACTTCAGAAGGGAATGTTTCACAAGGAGAGACCCACTTTCTACCGACAGGAGCTCAACAAGACGATATGGGAGGTCCCGGAGCGGTACCAGACCCTGTCCCCGGTCGGCTCGGGAGCCTACGGGTCCGTCTGCTCGTCGTATGACGTGAAGTCGGGGCTGAAGATAGCGGTGAAGAAGCTGTCGAGGCCGTTCCAGTCCGTCATCCACGCTAAGAGGACCTACAGAGAACTACGACTCCTCAAACACATGAAACACGAGAACGTGATCGGCCTGTTGGATGTGTTTACGCCCGCTACCAGCCTAGAGGAGTTCAACGATGTGTACCTGGTGACCCACCTGATGGGGGCGGACCTCAACAATATTGTCAAGTGTCAGAAACTGACGGACGACCACGTTCAGTTCCTCATATACCAGATCCTCCGGGGTCTcaagTATATCCATTCAGCAGACATCATCCACAGAGATCTGAAGCCCAGTAACTTGGCAGTGAATGAGGACTGTGAGCTCAAGATCCTGGACTTTGGTTTGGCGAGACACACGGATGATGAGATGACGGGTTACGTAGCAACCAGGTGGTACCGCGCCCCAGAGATCATGCTTAACTGGATGCACTACAACATGAcagttgacATCTGGTCGGTGGGCTGCATAATGGCGGAGCTGCTAACCGGAAGGACGTTATTCCCCGGCACCGACCATATTAACCAGCTGCAGCAGATCATGAGGCTGACAGGTACACCCCCGGCCTCTGTCATTAGCCGGATGCCCAGCCACGAGGCCAGAAACTACATTAACTCCCTTCCCCAGATGCCCAAGAGGAACTTTGCTGATGTGTTCATTGGCGCTAACCCACTAGcGGTGGATCTGTTAGAGAAGATGTTGGTTCTGGACACTGATCAGCGGATCACAGCGTCAGAGGCCCTGGCCCACCCCTACTTCTCCCAGTACCACGACCCAGACGATGAACCAGAGTCTGAGCCATACGACCAGAGCTTTGAGAGCCGTGAGCTGGAGATAGAGGAGTGGAAAAggtTGACCTATGAGGAGGTTTGCAGCTTCGAGCCCCTGCCATTCGACGGAGACGAGATGGAGTCCTGAGGGAACTAGGGTGATGTCATTGATAATCTTCTGCCTTCTCCTTCTCTTATGGAATTGTGTTGAGGAGGAAGTGGCATGTAGACATTGAACTCAGACCAGTTATGCGTTTCCTCCCCTAATGGTTTAGGTTAGGATCTGGGAGTAGGTTGAGCCTATCTTAGATCAGAATTTAGAGGCAACTTCCTCCCAGAGCACACAACCTTGTGTGAGGACTATCAACTCTCCGGACTatttaacaaacaaacaaatgggAAACCACGACATTCAAGTGTCTGTCGTCGTTCATTTCTGGGGTCATTCTCGGGTTAGAGATCAAGGGTTAAAGGTGACCGACCCCACCCTCCCGCTTGCTGTTTTATATTATATTGTTTATGTTTTGGTTTGTGGGCCGAACTGGGGAAATTACTTTGTAATATtgtatctactgtttgtgtgtttagAATATCTGTTAAGTTAGCTTCAGATTTTCACATGATTTGCTAAAAAGTATCTTATTTAATAAATTCCTGGAAATGGTACTCAGTTCAATATGGCAAAAACAATCAACCACATTATTTAATTTAACAAACCACTGGTACCTTCAAACATTTATTTATGACTTTAGGTTGGTAGTGTATAGCCAGATGTTATTTTACGTCCTTTTGGATCGAATTCAGTAGGAAACCCAACAGTGTAAATCACCTCTGCCCTTCTCTGAAAAGTTCTGTCTCCACAGTCAAACTGTACTCTGTTGTTATGCCTGCCAGTGttttacatatgtaaataaggctGCACTCTTGTAAATAAATGATACTATGCACACAGTAA
>XM_036983205.1
tggtttagaaactctgtggacAAACTGGcttagtagaacccataAAGATGGATGGATGATTTTTCAGCAATAATGCATCCAGGTGAAACAGGGGATGAACTTCAGAAGCTCGTCGTATGACGTGAAGTCGGGGCTGAAGATAGCGGTGAAGAAGCTGTCGAGGCCGTTCCAGTCCGTCATCCACGCTAAGAGGACCTACAGAGAACTACGACTCCTCAAACACATGAAACACGAGAACGTGATCGGCCTGTTGGATGTGTTTACGCCCGCTACCAGCCTAGAGGAGTTCAACGATGTGTACCTGGTGACCCACCTGATGGGGGCGGACCTCAACAATATTGTCAAGTGTCAGAAACTGACGGACGACCACGTTCAGTTCCTCATATACCAGATCCTCCGGGGTCTcaagTATATCCATTCAGCAGACATCATCCACAGAGATCTGAAGCCCAGTAACTTGGCAGTGAATGAGGACTGTGAGCTCAAGATCCTGGACTTTGGTTTGGCGAGACACACGGATGATGAGATGACGGGTTACGTAGCAACCAGGTGGTACCGCGCCCCAGAGATCATGCTTAACTGGATGCACTACAACATGAcagttgacATCTGGTCGGTGGGCTGCATAATGGCGGAGCTGCTAACCGGAAGGACGTTATTCCCCGGCACCGACCATATTAACCAGCTGCAGCAGATCATGAGGCTGACAGGTACACCCCCGGCCTCTGTCATTAGCCGGATGCCCAGCCACGAGGCCAGAAACTACATTAACTCCCTTCCCCAGATGCCCAAGAGGAACTTTGCTGATGTGTTCATTGGCGCTAACCCACTAGcGGTGGATCTGTTAGAGAAGATGTTGGTTCTGGACACTGATCAGCGGATCACAGCGTCAGAGGCCCTGGCCCACCCCTACTTCTCCCAGTACCACGACCCAGACGATGAACCAGAGTCTGAGCCATACGACCAGAGCTTTGAGAGCCGTGAGCTGGAGATAGAGGAGTGGAAAAggtTGACCTATGAGGAGGTTTGCAGCTTCGAGCCCCTGCCATTCGACGGAGACGAGATGGAGTCCTGAGGGAACTAGGGTGATGTCATTGATAATCTTCTGCCTTCTCCTTCTCTTATGGAATTGTGTTGAGGAGGAAGTGGCATGTAGACATTGAACTCAGACCAGTTATGCGTTTCCTCCCCTAATGGTTTAGGTTAGGATCTGGGAGTAGGTTGAGCCTATCTTAGATCAGAATTTAGAGGCAACTTCCTCCCAGAGCACACAACCTTGTGTGAGGACTATCAACTCTCCGGACTatttaacaaacaaacaaatgggAAACCACGACATTCAAGTGTCTGTCGTCGTTCATTTCTGGGGTCATTCTCGGGTTAGAGATCAAGGGTTAAAGGTGACCGACCCCACCCTCCCGCTTGCTGTTTTATATTATATTGTTTATGTTTTGGTTTGTGGGCCGAACTGGGGAAATTACTTTGTAATATtgtatctactgtttgtgtgtttagAATATCTGTTAAGTTAGCTTCAGATTTTCACATGATTTGCTAAAAAGTATCTTATTTAATAAATTCCTGGAAATGGTACTCAGTTCAATATGGCAAAAACAATCAACCACATTATTTAATTTAACAAACCACTGGTACCTTCAAACATTTATTTATGACTTTAGGTTGGTAGTGTATAGCCAGATGTTATTTTACGTCCTTTTGGATCGAATTCAGTAGGAAACCCAACAGTGTAAATCACCTCTGCCCTTCTCTGAAAAGTTCTGTCTCCACAGTCAAACTGTACTCTGTTGTTATGCCTGCCAGTGttttacatatgtaaataaggctGCACTCTTGTAAATAAATGATACTATGCACACAGTAA

Function


symbol description
p38a Enables MAP kinase activity. Involved in several processes, including defense response to other organism; paracrine signaling; and positive regulation of cell size. Located in nucleus. Is expressed in adult head; embryonic midgut chamber; embryonic primordium of adult hindgut precursor; embryonic/larval midgut; and organism. Orthologous to human MAPK11 (mitogen-activated protein kinase 11).

NR:

description
mitogen-activated protein kinase 14A-like isoform X1

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036983204.1 False 2218 mRNA 0.45 12 38214031 38260106
XM_036983203.1 False 1991 mRNA 0.48 14 38214031 38260309
XM_036983205.1 True 1882 mRNA 0.47 13 38214031 38260322

Neighbor


gene id symbol gene type direction distance location
LOC110527710 LOC106582681 coding downstream 14531 38170183 ~ 38199500 (-)
LOC110527706 LOC105030694 coding downstream 117509 38093203 ~ 38096522 (-)
LOC110527705 LOC106582679 coding downstream 134397 38063289 ~ 38079634 (-)
LOC118965380 NA coding downstream 277655 37935371 ~ 37936376 (-)
LOC110527702 ppp1r16b coding downstream 281572 37803814 ~ 37932459 (-)
LOC110527712 LOC106593203 coding upstream 4049 38264371 ~ 38269527 (-)
LOC110527714 LOC103464903 coding upstream 43708 38304030 ~ 38499669 (-)
LOC110527715 LOC106582687 coding upstream 271610 38531932 ~ 38659391 (-)
LOC110527716 LOC106582688 coding upstream 442915 38703237 ~ 38757485 (-)
LOC110527718 LOC106582690 coding upstream 510176 38770498 ~ 38793057 (-)
G603962 NA non-coding downstream 79733 38134066 ~ 38134298 (-)
G603960 NA non-coding downstream 81228 38132561 ~ 38132803 (-)
G603956 NA non-coding downstream 83481 38130076 ~ 38130550 (-)
G603938 NA non-coding downstream 113385 38100392 ~ 38100646 (-)
G604049 NA non-coding upstream 10367 38270689 ~ 38270930 (-)
G604058 NA non-coding upstream 20168 38280490 ~ 38280791 (-)
G604484 NA non-coding upstream 323971 38584293 ~ 38639400 (-)
G604491 NA non-coding upstream 346135 38606457 ~ 38606722 (-)
G601245 NA other downstream 2452761 35760699 ~ 35761270 (-)
G600881 NA other downstream 3158803 35001880 ~ 35055228 (-)
G600872 NA other downstream 3247245 34965447 ~ 34966786 (-)
G600721 NA other downstream 3599156 34614492 ~ 34614875 (-)
LOC110527679 LOC106565035 other downstream 4439417 33770050 ~ 33774908 (-)
G604485 NA other upstream 328833 38589155 ~ 38597519 (-)
LOC110527723 LOC106582696 other upstream 802683 39063005 ~ 39123578 (-)
G606135 NA other upstream 1578569 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1963233 40135298 ~ 40275270 (-)

Expression



Co-expression Network