LOC110527716 (LOC106582688)


Basic Information

Item Value
gene id LOC110527716
gene name LOC106582688
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38703237 ~ 38757485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609173.2
cccgctctcttcctCGCTTTGTACTTTTCCCCTCTGTTTTCTGAACTCTGTTCATCTCCACGCTGATCCCATCTCCTCTTCACTCATCTCCTCATCCTGTCGTATTGTGGTGTATGGAGTGAGGATCTCCGGTCCTGCCTGCACCCatcctctctacacctccctccatGGGCATCCGAGCATCCTGCAGaccagacCCTGCGCCGCGGGGAGGTGCGTCCAAGCAGAATGACTCTCCTATCCCAGACCAGGATGAGGAGATACTGGGCTCTGATGACGAGGAGCAGGAGGATCCCAACGACTACTGTAGAGGAGGTTACCACCATGTGAAGATAGGAGACCTGTTCAATGGAAGATACCATGTGATCAGGAAGCTGGGCTGGGGACATTTCTCCACTGTATGGCTGGCCTGGGACATACAGGGGAAGCGTTTTGTGGCCATGAAGGTGGTGAAGAGTGCAGAGCACTACACTGAGACGGCCCTGGATGAGATCAAGCTGCTGAGATCGGTGAGGAACACGGACCAGAACGACCCCAGCAGAGAGAAGGTGGTTCAGCTACTAGACGACTTCAAGATCTCTGGCATGAACGGAAGTCATGTCTGTATGGTGTTTGAGGTACTGGGTCATCACTTGCTGAAGTGGATCATCAAGTCTaactaccagggccttcctctgccCTGTGTCAAAAGCATCATTCGACAGGTTCTCCAGGGGCTGGACTACCTCCACTCAAAGTGTAAGATCATCCACACGGACATCAAGCCAGAGAACATCTTGTTGACTGTTAACGAGCCCTACATTAGGAATATGGCTGCTGAAGCTACGGAGTGGCAGAGGACAGGAGCTCCACCCCCCTCTGGATCTGCAGTGAGCACAGCCCCTGCGCCCAAACCAACGGTGAAGATGTCaaagaacaagaagaagaagatgaagaagaaacAGCGGAAGCAGGCAGAGATGTTAGAGAAGAGGATTCAGGAGATGGAGGGAGCGccggagggaggagaggaggagggggaagaggagactgAAGGGGTAACCACAGACGCTCCCCCGCCCACCTCCGACACGCTACAGGACATTGCTAATGGTGTCACAGCAGACCCAGCTCCAGATAAAACGGAGGAGGAGAGCAGGATGGAGGTGAACTGCAATGGCCACGCCCTCTCGGAGAGCCATGAGGTACAGAGGACCAgcgaagaagaagaggaggaccaacaGAACGCCAACAAACTTGACGCCGTAGCCCCCAACAACGCCAGTATACAGGGACGGGACTCGCCGGCCAACGCAGTTTACCGAGAATGCAACGGCAGAGTGCACGGCGACTCCGGAACACACGATAAagaagggagaggaaaggagggcaaGACGGAGGAGTGTAAACGACCAGAgaaggatggggaagagagaaaagACGAGGAGATGGAAACTGATGTGGTGCCTGgaagagaggatgaagaggaggagggcgaGAGGAACGATAAAATAGCAGCAGGCAGTCTGTTGGTCAACCCTCTGGAACCTCTCAATGCAGACAAGATCCAGATCAAAATAGCTGACCTGGGGAATGCCTGCTGGGTGcaCAAGCACTTTACAGACGACATCCAAACTCGTCAGTACCGTTCTCTGGAGGTGCTGATGGGAGCCGGCTATGGGACGCCTGCTGATATCTGGAGCACTGCCGCAATGGCTTTTGAGCTGGCTACAGGAGACTACCTGTTTGAGCCTCACTCTGGGGAGGACTACTCTAGAGATGAAGATCACATAGCTTTGATCATTGAGTTGTTGGGTAAAGTTCCTAAGAAGCTGATCCTGGCCGGAAAATACTCCAAGGAGTTCTTCACCAAGAAAGGTGACCTGAGGCACATTACCAAGCTGAAGCCATGGGGTCTGTTGGAGGTGCTGGTGGAGAAGTATGAGTGGTCTAAAGAGGAGGCAGCTACCTTCGCTAGCTTCCTTTTCCCAATGTTGGACCTGGTACCAGAGAAGAGAGCTACGGCTGCAGAGTGCCTCCGACACGCATGGATCGCCCCCTAGAGGAGCCACAGCGCTACTACAGTCAACAAGCAGCTCATACaggacacacatgcatacatacatgaaCATAtgtacatacccacacacacacacacaaacatgcatacgCACTCAcaagcattcacacacacacatatagatacACACTAAGAGGAAGCCGTTGCCAGCACAATGCCTGCATTGCCTCCCTAGTGGCTCAACACACGCACAAACCACGCTAGACTGGCTACTGAAGCCCTACTGGTGGCCTTCATAGAAAACACTGGTTCCAGATAAATAAACACAAGGAAGCCCGATCCAGCAGCACTATATCtatttatgtctctctcttttactTTGTTTCTTTTTGGTACTGACTGGATATGACTTGAGTATCTGATCTCTTTTTCTTTATTTACTCTTGTTTTTCTCTGTGCCAATGATGACACCTCTAACAAGTTTCATTCAGAGTTTCTCTTTTGTTTTTGTTCCTTTAACAGATGTGCATGTTCAGAGTTAAGATCAAACCTCACAGACCTCCACTGGACAATTTCCAGACCAATCCAATCATATCTACAGAACACCCACTGTACCACTATACTAGCACATCCGAATGGTTGttattttatatacagtgttgaTAGAGGTTAGTTTGAGTCTTTTCCTTCAATAACAAAGCATATTTACAATGTGTGTAGGATTGTGGGGAAGAGTAGCTACCTAGAAAGTAATCGAAGGATTCTCCATGAAGTATTCCTGAACTGGAATTGACTGAATGCAATGGAACTTGTTCTGTTTCTCTTCTATGACATCATCCCTGTCCTATCCTTTCTTGTCTCATTCCAAGCAGCCGTTTTGGAATGGCACTTACCACAGTGTGGAGATGGTACCATCATACTCTGTCCCGCGTTTGATTTACTACCTTCTGTTACCTGCATTGATCCACAGACCATGACTAGACCAATGCTACTGAATAGCCATGTTTCAAACTAGCCAGCAGATTCTGACCTTACCGTTACGTTTGTTTACACTAAGCTGCACTGGGGTCGGAACGCAATCATGGTTAGATTTTGACACCGTGGAGCCGGCGCACTGTCGAAAACGTTCCTCAATGCAGCGATGGGATGTGCCACTGTACCCCAAATTGTACTTCAATTCAAACTTCCCTTTTCCTTCTCATCCGAGCTAGCAGTAGGCACAGCAGCCATTATGGAATGGCACATCGCGTTGAACAACAGaggctgattggctgacactgcCATTCCAAAATGGTGGCGGTGGCTATTGCTCGCTAGCATGAGGATGAAAGGGCATTTTTCTAGTAAAACtagcagtatttcaatcttctTGATGTATCAGTTTGGATATAGGTAAACTTTTCAGTACAGTGTTATATCCAAGGATGTATATCAaacctggattgctgatgctatgtattggccaatgagtgGCTTTGAAGCAACCGGTCGaccatattggcactccctagAAGAGGCAGTCCTTCATAGGACTTAATGGAATTccacagtatttcaattaaattaaaGGACAAAATGAcctgtttttaaatatttttgtagtggggacagtaacaatttaaaagtatgcattaaggtgtctaaCAGAATAAACTTGGTAAAAACAGACAGTTAATGTAGACAGtcaatgtagacattaataaatgcatttgtaTAGCTTCCCAAACATTTTTTTACAATGGTGGAGTGCCAAGATGACGGCGTGGTGGCTTCAAAACAGTGACCCTGTAAgtcatctagtgtgtgtgtgtatataaatcaTTGGGCACATCCCATCCCTGCATTGAGAAGTTTTCCAGCCCATATCTCGCTGCGGCTCTGTGGTGTATTAATCTAACCATGATTGTGTTCTgaccccagtgcagctcagtgtaaacaagcGTAACATAGGGTCAGAATCTGCTGGCTAGTTTCATACCTCTCCTGTGGTGTTTAAGGTTCTAGATAAGGTTTGCCTCTGAGaaaataatgttgtttttttttgctaGATGGTGTGATACAAGAGCGTAGGAATTTTCCCGTTTCAGAAAAATTATCAGAATTCTGTATTCGATTCCAGAGcagatttacaaaaaaaaaatgactcaTTCTTTATATAGttggaacagggtgccattttaggCACAACCCATATCTGAACCCCTATCTTGTACATATCTGTACCAAAGAGTTGGCCTTGTCTCTCTGAACTTGTGTTTGGAGCTTCTGTTTGAACTGTGTATATTATGAAGGAGCGGAAGCtctgcctgtgtcccaaatggcaccctattacgtATTTTGTGCCCCATTTATGACTAGAGCCCAtttaggctctggtcaaaagtaatgcactatatagggaatcggatGCCTTTTGGAATACACACTCTGCTAAGGTGCAAATGTTTGAATGAGTCGTTATGAGGTCGATTGATGCCTTGAGATGCATTTGCTAGTTTTTTTTGCTGCATTTTTAAAGCTTATTTTCATACTGACGTTGCCCCTCTTGCAGTGTAGGACTGTTTTAAATGcatcaaagagagagaaatgtataATCGTGGATTGTAATAAAGAATGATGACACTGTTATAATGCTTTGAAGGGTGCCCTCCCCCCGATCCCATTGGTTGCTCTTTTTCTACAAGCCCCTCTCCTCCCGCCCTCGTTCTCAATGCGCTCTTCCCCTGACCTCTCATTGCCTTTCTTCCTcatctgcctccccctctcctgaCCTCCCTCTCTGCATTTAATTGTTCACTGCTAAACTAAGCATTTTCTGTAGTTGAATAAACATTTAGATTTT
>XM_021609171.2
TGAAGCGATAGGAAATGGCATGGACGGATGAGCGCTCAACTCCGTTCACATACTCTGGTACAGGTTGGGGTTATGGACGTCCCAAGAATTCCAGATTGCAATGACCAAGGGACGCATGCGCTCTGACTACTATACTGAAAACATCGCTCAACTCCAGCTTGAACCCCATCCCCCGGGCCCGTTTACAGCATGGAAAGGAAAGTTCTTGCACTCCAGGCGAGGAAGAAAAGGACAAAGACGAAAAAACCCGGCAAAAAaccagacCCTGCGCCGCGGGGAGGTGCGTCCAAGCAGAATGACTCTCCTATCCCAGACCAGGATGAGGAGATACTGGGCTCTGATGACGAGGAGCAGGAGGATCCCAACGACTACTGTAGAGGAGGTTACCACCATGTGAAGATAGGAGACCTGTTCAATGGAAGATACCATGTGATCAGGAAGCTGGGCTGGGGACATTTCTCCACTGTATGGCTGGCCTGGGACATACAGGGGAAGCGTTTTGTGGCCATGAAGGTGGTGAAGAGTGCAGAGCACTACACTGAGACGGCCCTGGATGAGATCAAGCTGCTGAGATCGGTGAGGAACACGGACCAGAACGACCCCAGCAGAGAGAAGGTGGTTCAGCTACTAGACGACTTCAAGATCTCTGGCATGAACGGAAGTCATGTCTGTATGGTGTTTGAGGTACTGGGTCATCACTTGCTGAAGTGGATCATCAAGTCTaactaccagggccttcctctgccCTGTGTCAAAAGCATCATTCGACAGGTTCTCCAGGGGCTGGACTACCTCCACTCAAAGTGTAAGATCATCCACACGGACATCAAGCCAGAGAACATCTTGTTGACTGTTAACGAGCCCTACATTAGGAATATGGCTGCTGAAGCTACGGAGTGGCAGAGGACAGGAGCTCCACCCCCCTCTGGATCTGCAGTGAGCACAGCCCCTGCGCCCAAACCAACGGTGAAGATGTCaaagaacaagaagaagaagatgaagaagaaacAGCGGAAGCAGGCAGAGATGTTAGAGAAGAGGATTCAGGAGATGGAGGGAGCGccggagggaggagaggaggagggggaagaggagactgAAGGGGTAACCACAGACGCTCCCCCGCCCACCTCCGACACGCTACAGGACATTGCTAATGGTGTCACAGCAGACCCAGCTCCAGATAAAACGGAGGAGGAGAGCAGGATGGAGGTGAACTGCAATGGCCACGCCCTCTCGGAGAGCCATGAGGTACAGAGGACCAgcgaagaagaagaggaggaccaacaGAACGCCAACAAACTTGACGCCGTAGCCCCCAACAACGCCAGTATACAGGGACGGGACTCGCCGGCCAACGCAGTTTACCGAGAATGCAACGGCAGAGTGCACGGCGACTCCGGAACACACGATAAagaagggagaggaaaggagggcaaGACGGAGGAGTGTAAACGACCAGAgaaggatggggaagagagaaaagACGAGGAGATGGAAACTGATGTGGTGCCTGgaagagaggatgaagaggaggagggcgaGAGGAACGATAAAATAGCAGCAGGCAGTCTGTTGGTCAACCCTCTGGAACCTCTCAATGCAGACAAGATCCAGATCAAAATAGCTGACCTGGGGAATGCCTGCTGGGTGcaCAAGCACTTTACAGACGACATCCAAACTCGTCAGTACCGTTCTCTGGAGGTGCTGATGGGAGCCGGCTATGGGACGCCTGCTGATATCTGGAGCACTGCCGCAATGGCTTTTGAGCTGGCTACAGGAGACTACCTGTTTGAGCCTCACTCTGGGGAGGACTACTCTAGAGATGAAGATCACATAGCTTTGATCATTGAGTTGTTGGGTAAAGTTCCTAAGAAGCTGATCCTGGCCGGAAAATACTCCAAGGAGTTCTTCACCAAGAAAGGTGACCTGAGGCACATTACCAAGCTGAAGCCATGGGGTCTGTTGGAGGTGCTGGTGGAGAAGTATGAGTGGTCTAAAGAGGAGGCAGCTACCTTCGCTAGCTTCCTTTTCCCAATGTTGGACCTGGTACCAGAGAAGAGAGCTACGGCTGCAGAGTGCCTCCGACACGCATGGATCGCCCCCTAGAGGAGCCACAGCGCTACTACAGTCAACAAGCAGCTCATACaggacacacatgcatacatacatgaaCATAtgtacatacccacacacacacacacaaacatgcatacgCACTCAcaagcattcacacacacacatatagatacACACTAAGAGGAAGCCGTTGCCAGCACAATGCCTGCATTGCCTCCCTAGTGGCTCAACACACGCACAAACCACGCTAGACTGGCTACTGAAGCCCTACTGGTGGCCTTCATAGAAAACACTGGTTCCAGATAAATAAACACAAGGAAGCCCGATCCAGCAGCACTATATCtatttatgtctctctcttttactTTGTTTCTTTTTGGTACTGACTGGATATGACTTGAGTATCTGATCTCTTTTTCTTTATTTACTCTTGTTTTTCTCTGTGCCAATGATGACACCTCTAACAAGTTTCATTCAGAGTTTCTCTTTTGTTTTTGTTCCTTTAACAGATGTGCATGTTCAGAGTTAAGATCAAACCTCACAGACCTCCACTGGACAATTTCCAGACCAATCCAATCATATCTACAGAACACCCACTGTACCACTATACTAGCACATCCGAATGGTTGttattttatatacagtgttgaTAGAGGTTAGTTTGAGTCTTTTCCTTCAATAACAAAGCATATTTACAATGTGTGTAGGATTGTGGGGAAGAGTAGCTACCTAGAAAGTAATCGAAGGATTCTCCATGAAGTATTCCTGAACTGGAATTGACTGAATGCAATGGAACTTGTTCTGTTTCTCTTCTATGACATCATCCCTGTCCTATCCTTTCTTGTCTCATTCCAAGCAGCCGTTTTGGAATGGCACTTACCACAGTGTGGAGATGGTACCATCATACTCTGTCCCGCGTTTGATTTACTACCTTCTGTTACCTGCATTGATCCACAGACCATGACTAGACCAATGCTACTGAATAGCCATGTTTCAAACTAGCCAGCAGATTCTGACCTTACCGTTACGTTTGTTTACACTAAGCTGCACTGGGGTCGGAACGCAATCATGGTTAGATTTTGACACCGTGGAGCCGGCGCACTGTCGAAAACGTTCCTCAATGCAGCGATGGGATGTGCCACTGTACCCCAAATTGTACTTCAATTCAAACTTCCCTTTTCCTTCTCATCCGAGCTAGCAGTAGGCACAGCAGCCATTATGGAATGGCACATCGCGTTGAACAACAGaggctgattggctgacactgcCATTCCAAAATGGTGGCGGTGGCTATTGCTCGCTAGCATGAGGATGAAAGGGCATTTTTCTAGTAAAACtagcagtatttcaatcttctTGATGTATCAGTTTGGATATAGGTAAACTTTTCAGTACAGTGTTATATCCAAGGATGTATATCAaacctggattgctgatgctatgtattggccaatgagtgGCTTTGAAGCAACCGGTCGaccatattggcactccctagAAGAGGCAGTCCTTCATAGGACTTAATGGAATTccacagtatttcaattaaattaaaGGACAAAATGAcctgtttttaaatatttttgtagtggggacagtaacaatttaaaagtatgcattaaggtgtctaaCAGAATAAACTTGGTAAAAACAGACAGTTAATGTAGACAGtcaatgtagacattaataaatgcatttgtaTAGCTTCCCAAACATTTTTTTACAATGGTGGAGTGCCAAGATGACGGCGTGGTGGCTTCAAAACAGTGACCCTGTAAgtcatctagtgtgtgtgtgtatataaatcaTTGGGCACATCCCATCCCTGCATTGAGAAGTTTTCCAGCCCATATCTCGCTGCGGCTCTGTGGTGTATTAATCTAACCATGATTGTGTTCTgaccccagtgcagctcagtgtaaacaagcGTAACATAGGGTCAGAATCTGCTGGCTAGTTTCATACCTCTCCTGTGGTGTTTAAGGTTCTAGATAAGGTTTGCCTCTGAGaaaataatgttgtttttttttgctaGATGGTGTGATACAAGAGCGTAGGAATTTTCCCGTTTCAGAAAAATTATCAGAATTCTGTATTCGATTCCAGAGcagatttacaaaaaaaaaatgactcaTTCTTTATATAGttggaacagggtgccattttaggCACAACCCATATCTGAACCCCTATCTTGTACATATCTGTACCAAAGAGTTGGCCTTGTCTCTCTGAACTTGTGTTTGGAGCTTCTGTTTGAACTGTGTATATTATGAAGGAGCGGAAGCtctgcctgtgtcccaaatggcaccctattacgtATTTTGTGCCCCATTTATGACTAGAGCCCAtttaggctctggtcaaaagtaatgcactatatagggaatcggatGCCTTTTGGAATACACACTCTGCTAAGGTGCAAATGTTTGAATGAGTCGTTATGAGGTCGATTGATGCCTTGAGATGCATTTGCTAGTTTTTTTTGCTGCATTTTTAAAGCTTATTTTCATACTGACGTTGCCCCTCTTGCAGTGTAGGACTGTTTTAAATGcatcaaagagagagaaatgtataATCGTGGATTGTAATAAAGAATGATGACACTGTTATAATGCTTTGAAGGGTGCCCTCCCCCCGATCCCATTGGTTGCTCTTTTTCTACAAGCCCCTCTCCTCCCGCCCTCGTTCTCAATGCGCTCTTCCCCTGACCTCTCATTGCCTTTCTTCCTcatctgcctccccctctcctgaCCTCCCTCTCTGCATTTAATTGTTCACTGCTAAACTAAGCATTTTCTGTAGTTGAATAAACATTTAGATTTT

Function

NR:

description
SRSF protein kinase 1-like isoform X1

GO: NA

KEGG:

id description
K15409 SRPK1; serine/threonine-protein kinase SRPK1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609173.2 False 4841 mRNA 0.47 14 38703237 38738350
XM_021609171.2 True 4908 mRNA 0.47 15 38703237 38757485

Neighbor

gene id symbol gene type direction distance location
LOC110527715 LOC106582687 coding downstream 43846 38531932 ~ 38659391 (-)
LOC110527714 LOC103464903 coding downstream 203568 38304030 ~ 38499669 (-)
LOC110527712 LOC106593203 coding downstream 433710 38264371 ~ 38269527 (-)
LOC110528948 p38a coding downstream 442915 38214031 ~ 38260322 (-)
LOC110527710 LOC106582681 coding downstream 503737 38170183 ~ 38199500 (-)
LOC110527718 LOC106582690 coding upstream 13013 38770498 ~ 38793057 (-)
LOC110527719 LOC106582691 coding upstream 101383 38831707 ~ 38862874 (-)
LOC110527720 LOC106582692 coding upstream 105534 38863019 ~ 38866559 (-)
LOC110527721 LOC106582693 coding upstream 134329 38891814 ~ 38916821 (-)
LOC110527722 LOC106582694 coding upstream 176316 38933801 ~ 39055212 (-)
G604631 NA non-coding downstream 5415 38697516 ~ 38697822 (-)
G604491 NA non-coding downstream 96515 38606457 ~ 38606722 (-)
G604484 NA non-coding downstream 109417 38584293 ~ 38639400 (-)
G604058 NA non-coding downstream 422446 38280490 ~ 38280791 (-)
G604049 NA non-coding downstream 432307 38270689 ~ 38270930 (-)
G604677 NA non-coding upstream 24273 38781758 ~ 38782013 (-)
G604678 NA non-coding upstream 25137 38782622 ~ 38782880 (-)
G604684 NA non-coding upstream 31928 38789413 ~ 38789620 (-)
G604706 NA non-coding upstream 48739 38806224 ~ 38806443 (-)
G604708 NA non-coding upstream 49012 38806497 ~ 38806712 (-)
G604485 NA other downstream 105718 38589155 ~ 38597519 (-)
G601245 NA other downstream 2941967 35760699 ~ 35761270 (-)
G600881 NA other downstream 3648009 35001880 ~ 35055228 (-)
G600872 NA other downstream 3736451 34965447 ~ 34966786 (-)
LOC110527723 LOC106582696 other upstream 305520 39063005 ~ 39123578 (-)
G606135 NA other upstream 1081406 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1466070 40135298 ~ 40275270 (-)
G606973 NA other upstream 1871764 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 2399185 41156665 ~ 41348915 (-)

Expression


Co-expression Network