LOC110527719 (LOC106582691)


Basic Information

Item Value
gene id LOC110527719
gene name LOC106582691
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38831707 ~ 38862874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609176.2
TAACTTTTATATCTTAtgtttaactctgcattgttggaagaGGACCTGTAAGTAAAAGTTACTgttaatctacacctgttgtctacgaagcatgtgacaaataacatttgatttcgaTAGCCACTGCAGAAAAGCTCAATCCCCAATCAAGATGGTGCTACCCATGCCTATCCAATCCTTTCCGATATACAAAAGTGGTTAGGGTTTGATTTGGGATTCAGGGTTTAGGTACCACATACATCTATTCCAGAATGTATCTATACAGCCTCAGTGGTGTCAAAACCTAGCGGAAAAACAAGGAAGTGGGTCCAATTGTTTTTCTAGCATACATTTTTCACATAGGGGATTTTGGAAATACTCCaaaggctgtgttttgtgtaggcgtACGTACCCAGGCGTGATGTTtagataaccatgtaaatctctctcaggTGACTTATCAATATAGTTGCCTCTTTACTCtgattcgaaaatgctaattagtgTCGAAGcagacatcatgcaaaactacaaatccccgcaagctcctgcatgtcatctctagctgacgtcttggctaacaggtattgtgtcaatttaaaacttgcacaaaaCAGTAAACAGAATTGTCCATTTcaaagaaatgtagccaatttatgaattactacatttagctaatcTAGATagtcttacctttgcctcgattcgcCAGTCTTGCCCAGATCGTGGCATTTATAGTTATTTAATGATAGCCACATTAGGAgaatgtatttcatttttgggggtaaatacaggcgaaTGTATTGACAAGTCTCCTTTTCCTAGAAATTTACAAGGCTATCAAAACGTaatgccagggtaagcctaacTGAAACACGGAcgttatttgaagtgtttctaaaatcccctatggaaaaacgattggaaccatttccctgttagatcactaggttttatgggtattatgacaaaCTTTTGTACTCTAATAATCTATTGTATTCCATGTGCTAATTAATTTGTCTCTGATGGTACAATTATTTCAACTGCCCAGGTTCTCAAGTACTTACGGTAACTAACAGCGGGCCAATTTCTGATTGCGTCACATTCTCAAGGCGTTTTGTTGTGTCGAAGATTATCTATTATATAGACAAGATGGTCTACAGACcgctttaacaatggaaatacatggaAACATTCTAGATCTAGCCCATGATTTAATGTAGAaaatatcacaggaggttggtggccccTTATTTGGGGAGCACGGGCTGGTGGTAACAGCTGGAGCGGCATACGTGGAATGGCATTGTAATGAAACGGGCCCAGGGAGCAGGTCTGGAACCCTCAACCtcctagcccgaagtccagcgcgctatcgactgtgccccaAAAGCATGCTCAAGTGGCAGTGGCGATATCTACACTTTTTTAACCCAGGTTCGTTTCAATTTGTTTGCCATTCCATttgttccattccagccattattatgagccgccatcccctcagcagcctccactgatttcaATAAACAACCAGAAGTAATGACGCTAGCAATAGCCTACGCTAATTGGTGGAGTAATTTAATTAGCTAAAATGTAAAACTGTTGATTTCACGGGTACAAAATGAAGGAAAAGTTAGAACCGTTACTTTTGGGGTGTTAAACCGGTTCAGAACTTCATGCTGGTTGGACCACTGGGACAGGACGAAATATATAGGGGTTCTGCTCAGAGAAGAACTATAGGAAACCGTTAACAACCCAAAGATTATGAAACGTCCATTAGATCAAATAACGCTCACCTATCAAAATAGCAATTCACTTTTATcttgaccaaattcgacactcgtTGCCCCTCATAACAAATCAAAAAAATAATACTCACTTGACACTTTGTGTGCTTAACGCTAGAAATCTAGGCGGAGTCGAACCTCCCGCTTCGCCTCTTTCCTCTCCGCTTGTGTTTAGCGGGTAAATGTGCCCTGGCTACCATCGACCCTCAAAATGACGAAATTAcaatttctaaatgtatttttgacAGAAAAGTTGATGTTAGCTGCCCAAGATATATATAAGCAAGTGGAAGAGACCATATTAGAATACCAGGAGGAAATATTCCAGGGAAAGCGAGAGAATGACAAACTGAGACGCAAGCTTCACGATAATGGGATTCCATGGCCAGACCGAGACCCCTTTTCTCCTGTAGaatctgaggaggaggagggagccaTTGGGCATAAGCAGGAACCAGACCTCGGACAGACTTTGGAGAAACAGGAGGGAAGGGCCAGAAGGGAGGAAAAGCTGTTTAGGGGACTGGCCCCGCTGTCTAGATTTGCTCCTTCTGATGGAAATGACTATGATCAGAACCCACCTCAACCCACCTCACATCAGTTCCAAATACAAACTCACACTGGGAAGACTATAGAGGGAGGCTTTCTATCAAGCTCAACAACCTCCAATCCAATCAAAACAGAGACTGATAGATTGGGTGTCTGTTCATTGGATGATACATCAAGTGATCCAAATACTTTCTCTTCAGGGAACCTCGACCTTTCGGCAGCACAGAGTGAGAACAGTGTAAGTATGATGGGGGTGGAAGGTGGTGACGAACTACTGTCAGGATTTGAGGCTCTACAGATACCGCTACACACTGAAAATTCAAATTCCCTTCAAATCCACCACGACACGTCATTGTGTTGCAAGGTGTGTGGGAAACCCTGTAGACACATGGGCCATTTAAATGCACATGTGCGAATGCACACGAAGGAGAAGCCATTTCTCTGTGGCTTGTGTGGTAAGTCCTTTAGCTCGTCTGGGAGGTTGAAAGGCCACCAGAggattcacacaggggagaagccctaCCAGTGTAATATCTGTAGGAAACGTTTCAATCAGACGGCGCACCTGAAGGTACACCTGagagtccacacaggggagaaaccatttAGTTGTCCCGtctgtgggaaaagcttcagtCAATCCAACAAGGTGAAAAGACACCTTGTGACACATTCTAGAGATGGTTCGTTCCTACCAGGCCTATAACGGAGATGTTTGTTCAATGATGTTTGTTTAAGGAGATGTTTGTTCAAATCCGTTCTGGTGTAGGAAATATTTAGGCTACTGGTTTATAATGAGGATTTTAACATGTCTTCCCAACCATACAGTGcttttgaaaagtattcagaccccttcacttttttcacattttgttatgttacagccttgttctaaaatggattaaatacattttcctcatcaacctacacacaataccccataatgacaaagcga
>TU689486
ATATTCCAGGGAAAGCGAGAGAATGACAAACTGAGACGCAAGCTTCACGATAATGGGATTCCATGGCCAGACCGAGACCCCTTTTCTCCTGTAGaatctgaggaggaggagggagccaTTGGGCATAAGCAGGAACCAGACCTCGGACAGACTTTGGAGAAACAGGAGGGAAGGGCCAGAAGGGAGGAAAAGCTGTTTAGGGGACTGGCCCCGCTGTCTAGATTTGCTCCTTCTGATGGAAATGACTATGATCAGAACCCACCTCAACCCACCTCACATCAGTTCCAAATACAAACTCACACTGGGAAGACTATAGAGGGAGGCTTTCTATCAAGCTCAACAACCTCCAATCCAATCAAAACAGAGACTGATAGATTGGGTGTCTGTTCATTGGATGATACATCAAGTGATCCAAATACTTTCTCTTCAGGGAACCTCGACCTTTCGGCAGCACAGAGTGAGAACAGTAATCTCTGGAGGAGTGTGAAGGGTACAGTAGGTCCAGTGATGAGCTGACTGACAACGGAGACAACACGTGAGCCTAACACGCAGAGGAAGATGGGCGAAGGACACATTACTGATACCTCAAGGAGGACCCCAGGGAGATGAAACACACAGAAATGTCAATCTGGAACCCTGGAGGAAAGTTCTGCAGTTCTACAAGCAGAACCTCATCTCGATCCATCGGAGgggggaaggtaccttgggagtgcttaggcaagaggacTGCGGGCATACATACACCTGTAGTATGTGCtatgtctatgcacactaggtaagacctgggtggaccatcccctgtattttggttagtgtGCCAGTTGGACCTAGTTAGGTAAGTAATGGGTAGAAGAGGGGGCTctaactttctttgctttggttccgtccagccccttttccctaAATTACCGTGTGAATGAATAAATTCCCTGTAATATA

Function

NR:

description
zinc finger protein 3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609176.2 False 3273 mRNA 0.42 2 38858868 38862874
TU689486 True 939 lncRNA 0.48 6 38831707 38860786

Neighbor

gene id symbol gene type direction distance location
LOC110527718 LOC106582690 coding downstream 65811 38770498 ~ 38793057 (-)
LOC110527716 LOC106582688 coding downstream 101383 38703237 ~ 38757485 (-)
LOC110527715 LOC106582687 coding downstream 199477 38531932 ~ 38659391 (-)
LOC110527714 LOC103464903 coding downstream 359199 38304030 ~ 38499669 (-)
LOC110527712 LOC106593203 coding downstream 589341 38264371 ~ 38269527 (-)
LOC110527720 LOC106582692 coding upstream 145 38863019 ~ 38866559 (-)
LOC110527721 LOC106582693 coding upstream 28940 38891814 ~ 38916821 (-)
LOC110527722 LOC106582694 coding upstream 70927 38933801 ~ 39055212 (-)
LOC110527723 LOC106582696 coding upstream 201340 39063005 ~ 39123578 (-)
LOC110527724 LOC106582698 coding upstream 268567 39131441 ~ 39163634 (-)
G604708 NA non-coding downstream 52156 38806497 ~ 38806712 (-)
G604706 NA non-coding downstream 52425 38806224 ~ 38806443 (-)
G604684 NA non-coding downstream 69248 38789413 ~ 38789620 (-)
G604678 NA non-coding downstream 75988 38782622 ~ 38782880 (-)
G604677 NA non-coding downstream 76855 38781758 ~ 38782013 (-)
G605414 LOC100846954 non-coding upstream 25335 38888209 ~ 38891559 (-)
G605454 NA non-coding upstream 60350 38923224 ~ 38923464 (-)
G605460 NA non-coding upstream 66548 38929422 ~ 38929710 (-)
G605461 NA non-coding upstream 67873 38930747 ~ 38931016 (-)
G604484 NA other downstream 219468 38584293 ~ 38639400 (-)
G604485 NA other downstream 261349 38589155 ~ 38597519 (-)
G601245 NA other downstream 3097598 35760699 ~ 35761270 (-)
G600881 NA other downstream 3803640 35001880 ~ 35055228 (-)
G600872 NA other downstream 3892082 34965447 ~ 34966786 (-)
G606135 NA other upstream 976017 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1360681 40135298 ~ 40275270 (-)
G606973 NA other upstream 1766375 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 2293796 41156665 ~ 41348915 (-)

Expression


Co-expression Network