LOC110527720 (LOC106582692)


Basic Information

Item Value
gene id LOC110527720
gene name LOC106582692
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 38863019 ~ 38866559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609177.2
TCTAGCtcttgtaaaaataaaaataaactcgcAGCATAAGGAGTTGACTGTATCGTGTACTTATACACTGGCATTTCGTTTAGCTAAATCTTGAATGTATTCCATTGATGACAATAATACTCATAGGCTATGAGCTGAATATATTTTGGCCCCATTAGATTTAGGGCCTCGCGTTTTCCTATTATTACGGTAACAGCGGGCATTCCTTGTCACGTGATCAACGAGAGCATCTTTTTTGGTCCATTTTGGATGATAGCTGAGTCCTTGTAGCTAACCACGACCCGAAAATGACAAAACTGCAGTTTTTAAACGTATTTTTGACCGAGCGGCTTATGCTCGCTGCCCAGGAGATCTACAAATCTGTCGAAGACACGATTTTGGAATACCAAGAGGAGATTGCGCtcagggagagggagaacgaCCATCTGAGACGCAGACTCCGAGACGCTGGGATTGAAATATGGCCAGACCGTCAGTCTATGGcactattggaggaggaggatggcgaGCATCCTCGCCGGGAGTGGAGCCCCAGCATGGGCCATGAGGAGCGAGTCCCCATCCTGATCAAGGAGAAACGGGAGCTCAGGTCCAGCCAGGGGGACGAGCAACTCCGGGGCCACGGCTCCTGCAGCACCCCAGAGTCCATCTTCACTCCTCCCCGCGTCACCAACGAATACCCCCAGGACCCTCCCCACTCCTCTAACCTGCCCCAGAACCCGTCGGTGGAGAACAGAGAGCGGGACCCTGGTCCCAGAAGCTCATCCAGACACGTCAAGTCAGAAGTGACCCACAGAGGCTCCTCATCATCTTCGTCCAACAGCGTCCCGCAGCCCCTCGCCACAGTCAACCCCAACTGCTCCAACGAGAACAACATTGACATCATTGGAGTGGAGAACGGAGGACAGATGTTGGTGTCTGGGTCTAAAGGACGAGCTGGTGGGAGCAGAGGTCAGGCCTCCCATTTAGGTGACCAGGGCAGTAACGCGGCCGCAGAGTGTGGAAAATCCCCCCTCCAGGTGCACGTGTCATCGTTCTGCTGCAAGGTGTGTGGGGAGGCATTCAGCCACGTTGGACACCTACATGTCCATGTCCAGGTGCACACCCGGGAGAAGCCGTACCGCTGCGGGGTGTGTGGGAAGTGTTGCAGCTCCTCCGGCAGGCTCCAGGAGCACGCCAGGagtcacactggagagaagccgtTCCGCTGCCAGATCTGTGGGAAGGGTTTCACCCAGATGGCCCATTTGAAGGTCCACATGCGGAtccacacgggagagaaaccATACAGCTGCCCAGTGTGTGGAAAGTGCTTCAGCCGCTCCGACAAAATCAAACGTCATCTCCAGACCCACAGCCGTGAGGGCACTTACTTCTCAGGGCAGTAAGATGAGGGAGACCACCGGTGGTTGTGGGTGGTAATGAGCGACTGAGTctgtatgaatgaatgaatgaatgaattactGATTATGGGACATTTTTTAAAAGCTAAAATTGCTGCCATTAAGACGGCTTgttatttttctctttctctcaaagaGCTAGGGATTCTGTGACTTTCTTAGAATGTTTTATCTCCTAGTTAAACACTTCTCTCCATGCCATAGTTTCTCTCTCATGCAGTAGATTTGTATAGTCGATTTAGTATGTGTCCATTTACTTTTTGTACTTGTCACTGAATGGGATAATAGGGAATCTTTAAACACCAAATTGAACGACTTAGTAGCTAGTCTTTCTGAATGATTTAGTCTTTACTTTTAGTAATGAAATTGGTAGCATGATGATAATGAAGTCTTCCACTATGCGCCTTGAAACGGAGATGCGTTCAGGCTTGCAACAATAAGCAGCATTCCAAAACGTGGTGGTCTTGCCCCAGACGATTTGCACAGGGCCAATTTACGCAtttctaaaatacattttattttattttttctcttCATTAATTTTTAAAAAGTATATCACAGCTTCTTCTAAAACCCACAAATCTTATTTCCTCAGTCAGCTGGCTGAAGTACATaagatgtttttatttgtaattctAATTAACAATGGCTAACCGTATGGGCATTGACTATAAACTGTTGTCCATTCCTTGAGTTTACAAATATGGATATAAGTACACATGTTCACCATTTGTTAGttagggttgggtaggttaggCAATAGCCCTGCCTGCTCGATTCAAGGTTTCTGTACAGTCACCTAAAGCCTCCCTGATACAACTGATGCTAAAGGACCATTTGCCTCTCTCGTCATCATTGCAGAACTGTGTACTGCCACCTGAATTTCAGTCAACTAACTTATCTTACAATTAAAAACATACTTATCAGTGAGGATTCAATGCAAAGACTGCTATTTTGCAAGATATGTTGCCTTGATAAGGATTGTTTGCTAATTCTGTATATGACCACTATCTATCCCCCACCTCTGATGCATATAGTGTGTCCTCTCTATGACCCGCACTACAGAATTTGACCAACACGGTGCAGAGACCAACAGATTCCCCAGCTGAGCCATACAGTATTACCCTGTATCTGAGCTGCTTGTTCCTGATTGTTGGCCCTGAGCTCAGcactgcacatactgtatattcactATAGTAAAGATCTGTTCTTGATGGCCAGTTTAAGTGTAACATACGTTTTGTTACAGATAGATCAAGCCTACTCCTGGAATCAAAAGCACTTTAGTTTATATTGCAAGTGCTTGTAATCTAGGGGTAGACTTAATGCAAGTCTCTACCTTTTTAGAAGTTTTTATCAGAACTTGAGCAGTGCCTAGCTGAGAACGAGGCTCATGAACAAGCAGTAGGCCTATGGCCCGGACCAGAAACAAACCATTGCCCAATCCCCTAGGCAAGTGTCTTGGGCAATAGGTGCTTGGGGTTGTTACTAGTAGACAGGGTCTTTATCTCCTCTCAGGACTGAGGCTACTACAGTAGGCCCTCTAATTTAACCAGcattcctccccttctctcccacaCAGTTTATTCTGGGACACCGctgctcccacacacacacacacacacacaactgtacaGTGTTGTATCATTATGTAATAAatgtaattttttaaataaagtagtCTGAGTA

Function

NR:

description
zinc finger and SCAN domain-containing protein 21-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609177.2 True 3092 mRNA 0.46 2 38863019 38866559

Neighbor

gene id symbol gene type direction distance location
LOC110527719 LOC106582691 coding downstream 145 38831707 ~ 38862874 (-)
LOC110527718 LOC106582690 coding downstream 69962 38770498 ~ 38793057 (-)
LOC110527716 LOC106582688 coding downstream 105534 38703237 ~ 38757485 (-)
LOC110527715 LOC106582687 coding downstream 203628 38531932 ~ 38659391 (-)
LOC110527714 LOC103464903 coding downstream 363350 38304030 ~ 38499669 (-)
LOC110527721 LOC106582693 coding upstream 25255 38891814 ~ 38916821 (-)
LOC110527722 LOC106582694 coding upstream 67242 38933801 ~ 39055212 (-)
LOC110527723 LOC106582696 coding upstream 197655 39063005 ~ 39123578 (-)
LOC110527724 LOC106582698 coding upstream 264882 39131441 ~ 39163634 (-)
LOC110527726 LOC106566095 coding upstream 313145 39179704 ~ 39181249 (-)
G604708 NA non-coding downstream 56307 38806497 ~ 38806712 (-)
G604706 NA non-coding downstream 56576 38806224 ~ 38806443 (-)
G604684 NA non-coding downstream 73399 38789413 ~ 38789620 (-)
G604678 NA non-coding downstream 80139 38782622 ~ 38782880 (-)
G605414 LOC100846954 non-coding upstream 21650 38888209 ~ 38891559 (-)
G605454 NA non-coding upstream 56665 38923224 ~ 38923464 (-)
G605460 NA non-coding upstream 62863 38929422 ~ 38929710 (-)
G605461 NA non-coding upstream 64188 38930747 ~ 38931016 (-)
G604484 NA other downstream 223619 38584293 ~ 38639400 (-)
G604485 NA other downstream 265500 38589155 ~ 38597519 (-)
G601245 NA other downstream 3101749 35760699 ~ 35761270 (-)
G600881 NA other downstream 3807791 35001880 ~ 35055228 (-)
G600872 NA other downstream 3896233 34965447 ~ 34966786 (-)
G606135 NA other upstream 972332 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1356996 40135298 ~ 40275270 (-)
G606973 NA other upstream 1762690 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 2290111 41156665 ~ 41348915 (-)

Expression


Co-expression Network