LOC110527726 (LOC106566095)


Basic Information

Item Value
gene id LOC110527726
gene name LOC106566095
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39179704 ~ 39181249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609188.2
CTTAAAATTTAGCtatatttaaattgtattttgaAAAAAGACCTAGCTCAAACAGGCACTTTATTACCCACCTCTGGGGTCCTGAGAAGGGACATTGCCGCGGAGGAGTCTGGGATTCTTCCTTTCTAGCCTGGGCTCGTAATCTGCAAACATGGGAAAGTGTCGCGGTCTGCGTACAGCCAGGAAGCTGCGTAACCATCGTCGTGAACAGAGATGGCATGATAAACAGTACAAGAAGGCCCATCTCGGCACTGCCCTGAAGGCTAACCCCTTCGGAGGCGCTTCCCACGCTAAGGGAATCGTACTTGAGAAAGTAGGTGTTGAAGCTAAGCAGCCCAACTCTGCCATTAGGAAGTGTGTCAGGGTCCAACTCATCAAGAATGGCAAGAAGATCACTGCCTTTGTCCCAAATGATGGTTGCTTGAATTTCATTGAGGAAAACGACGAGGTTCTGGTGGCAGGATTCGGTCGTAAGGGACATGCCGTCGGTGATATCCCCGGTGTCCGTTTCAAGGTGGTCAAAGTGGCTAACGTCTCCCTGCTGGCCCTTTACAAAGGCAAGAAGGAGAGACCCAGATCTTAAACAGTTCTTACTGTGAAATCAATAAATTATGTTTTCACAATT

Function

NR:

description
40S ribosomal protein S23

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02973 RP-S23e, RPS23; small subunit ribosomal protein S23e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609188.2 True 625 mRNA 0.48 4 39179704 39181249

Neighbor

gene id symbol gene type direction distance location
LOC110527724 LOC106582698 coding downstream 16070 39131441 ~ 39163634 (-)
LOC110527723 LOC106582696 coding downstream 56126 39063005 ~ 39123578 (-)
LOC110527722 LOC106582694 coding downstream 124492 38933801 ~ 39055212 (-)
LOC110527721 LOC106582693 coding downstream 262883 38891814 ~ 38916821 (-)
LOC110527720 LOC106582692 coding downstream 313145 38863019 ~ 38866559 (-)
LOC110527728 NA coding upstream 29985 39211234 ~ 39227773 (-)
LOC110527731 LOC106582704 coding upstream 133918 39315167 ~ 39369527 (-)
LOC110527733 LOC106582705 coding upstream 195859 39377108 ~ 39401955 (-)
LOC110527738 LOC106582708 coding upstream 845958 40027207 ~ 40101150 (-)
LOC110527740 LOC100194559 coding upstream 934338 40115587 ~ 40134473 (-)
G605575 NA non-coding downstream 50643 39085829 ~ 39129061 (-)
G605461 NA non-coding downstream 248688 38930747 ~ 38931016 (-)
G605555 NA non-coding upstream 14364 39195613 ~ 39244946 (-)
G605680 NA non-coding upstream 84425 39265674 ~ 39270145 (-)
G605721 NA non-coding upstream 147730 39328979 ~ 39329740 (-)
G605750 NA non-coding upstream 225262 39406511 ~ 39406727 (-)
G605761 NA non-coding upstream 240971 39422220 ~ 39422509 (-)
G604484 NA other downstream 540304 38584293 ~ 38639400 (-)
G604485 NA other downstream 582185 38589155 ~ 38597519 (-)
G601245 NA other downstream 3418434 35760699 ~ 35761270 (-)
G600881 NA other downstream 4124476 35001880 ~ 35055228 (-)
G606135 NA other upstream 657642 39838891 ~ 39841331 (-)
LOC110527741 LOC106582711 other upstream 1042306 40135298 ~ 40275270 (-)
G606973 NA other upstream 1448000 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 1975421 41156665 ~ 41348915 (-)
G607932 NA other upstream 1979899 41161148 ~ 41163397 (-)

Expression


Co-expression Network