Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110527728 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 39211234 ~ 39227773 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: U1 small nuclear ribonucleoprotein C isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | biological_process |
| GO:0000387 | spliceosomal snRNP assembly | biological_process |
| GO:0000395 | mRNA 5'-splice site recognition | biological_process |
| GO:0005685 | U1 snRNP | cellular_component |
| GO:0000243 | commitment complex | cellular_component |
| GO:0071004 | U2-type prespliceosome | cellular_component |
| GO:0003729 | mRNA binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0030619 | U1 snRNA binding | molecular_function |
| id | description |
|---|---|
| K11095 | SNRPC; U1 small nuclear ribonucleoprotein C |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021609190.2 | True | 1264 | mRNA | 0.43 | 6 | 39211234 | 39227773 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110527726 | LOC106566095 | coding | downstream | 29985 | 39179704 ~ 39181249 (-) |
| LOC110527724 | LOC106582698 | coding | downstream | 47600 | 39131441 ~ 39163634 (-) |
| LOC110527723 | LOC106582696 | coding | downstream | 87656 | 39063005 ~ 39123578 (-) |
| LOC110527722 | LOC106582694 | coding | downstream | 156022 | 38933801 ~ 39055212 (-) |
| LOC110527721 | LOC106582693 | coding | downstream | 294413 | 38891814 ~ 38916821 (-) |
| LOC110527731 | LOC106582704 | coding | upstream | 87394 | 39315167 ~ 39369527 (-) |
| LOC110527733 | LOC106582705 | coding | upstream | 149335 | 39377108 ~ 39401955 (-) |
| LOC110527738 | LOC106582708 | coding | upstream | 799434 | 40027207 ~ 40101150 (-) |
| LOC110527740 | LOC100194559 | coding | upstream | 887814 | 40115587 ~ 40134473 (-) |
| LOC110527741 | LOC106582711 | coding | upstream | 907525 | 40135298 ~ 40275270 (-) |
| G605575 | NA | non-coding | downstream | 82173 | 39085829 ~ 39129061 (-) |
| G605461 | NA | non-coding | downstream | 280218 | 38930747 ~ 38931016 (-) |
| G605680 | NA | non-coding | upstream | 37901 | 39265674 ~ 39270145 (-) |
| G605721 | NA | non-coding | upstream | 101206 | 39328979 ~ 39329740 (-) |
| G605750 | NA | non-coding | upstream | 178738 | 39406511 ~ 39406727 (-) |
| G605761 | NA | non-coding | upstream | 194447 | 39422220 ~ 39422509 (-) |
| G605767 | NA | non-coding | upstream | 202165 | 39429938 ~ 39430378 (-) |
| G604484 | NA | other | downstream | 571834 | 38584293 ~ 38639400 (-) |
| G604485 | NA | other | downstream | 613715 | 38589155 ~ 38597519 (-) |
| G601245 | NA | other | downstream | 3449964 | 35760699 ~ 35761270 (-) |
| G600881 | NA | other | downstream | 4156006 | 35001880 ~ 35055228 (-) |
| G606135 | NA | other | upstream | 611118 | 39838891 ~ 39841331 (-) |
| G606973 | NA | other | upstream | 1401476 | 40629249 ~ 40629880 (-) |
| LOC110527764 | LOC106582736 | other | upstream | 1928897 | 41156665 ~ 41348915 (-) |
| G607932 | NA | other | upstream | 1933375 | 41161148 ~ 41163397 (-) |
