LOC110527731 (LOC106582704)


Basic Information

Item Value
gene id LOC110527731
gene name LOC106582704
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39315167 ~ 39369527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609197.2
tgtgtgtgtgtgttgcggggGTGCTTAGACAACAGGGTGTGTCGTCTCCTTCAGGTGCATAGCTGTGCTAGTTGCCTCTAGCCTCTAACACTGTCCGTCTCGAGTGACACATCTCGCAAGCTTGGACACAGATCGTTCCGAGTGTTGCTTACAAGGACATAGCCAGCTCACACAGACGAGTGACCAGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAGCTGCTTGTGTACGAGGAGGACACTGCCCCATTGGTTAGTCACCCAGACTGAACCGTCTGATCATACTGCACATTACCAGAGACTACAAAGCAATgcttccccatccctcctctctacctgt
>XM_021609198.2
gtgtgtgtgtgttgcggggGTGCTTAGACAACAGGGTGTGTCGTCTCCTTCAGGTGCATAGCTGTGCTAGTTGCCTCTAGCCTCTAACACTGTCCGTCTCGAGTGACACATCTCGCAAGCTTGGACACAGATCGTTCCGAGTGTTGCTTACAAGGACATAGCCAGCTCACACAGACGAGTGACCAGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGaaaacaaacaatAGCAACACCCACGGCACCTGGCATGCATATGAACTGGCACCAGTTTGAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAGCTGCTTGTGTACGAGGAGGACACTGCCCCA
>XM_036983222.1
TGTGATAATGCTTGCTCAGCTCTCTGAGAAAATGGGTCTCTGAGCTGAACAAAAACAAAggggcgagaagagagagaggagtggagcccACGTGCCTCAGAGCTGTATCTGTAGCTAGCCGTCACGTCTCGCCTTGCTGATGGGGGAATGGGGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAG
>XM_036983224.1
GTCTGACAGGTACTTGGGTTCAGAGCTGTGGATGACTTGGTAGGTGTGAAACAGGATTTTGTTGTCGATGCGTGAGCATATACGGAGCCAGTGACGGTTGAACAGTACTGGAGTGATCAGGATACTTGCAGAACACTTCTGGGAAGTGCCTGTTTAGGCACTTGGCAGACGCGCCAACAAAATGGCCATTGCAATAGTCCAGACGGGGATGAGATAAAGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAG
>XM_036983223.1
CACTGACCTGGAGGTGTGAAGGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAG
>XM_036983221.1
CTGCCGCTTTTTGTGCAGCAGAAGGCAAGCCTTCACGCTGTCAATTGACGGAGCAGGGTCTACCTTTTTTTCTAGTTGCTATAACGGGAACTATTTTTATATTTAGGCCAACAGGGGAGTCGGACACATCGCATTGTGTTCTCTGtgCATGACGACCGTGACTCTGCTGCAGCCTCCCAGAACCTCCTCAAGCCCTCTAGGATCATGTCGGGCATCTACGATGAGTCCGCCAGCCAGGAGGATGGCACAGACAGCTTCTGGGAGGTGGGGAACTACAAGCGTGCTGTGAAGCGGATTGATGACGGCCACAGGCTCTGCAATGACCTGATGAACTGTATACAAGAGCGTGCCAAAATTGAGAAGGCCTACAGCCAGCAGCTGACCGACTGGTCCAAGAGATGGAGACAGCTGGTGGATAAAGgaCCCCAGTACGGCAGTGTGGAGAGGGCCTGGGTGGCAGTGATGACAGAGGCTGAGAAGGTAAGTGAGCTGCACCAGGATGTGAAGAACAACCTGGTCAACAATGACTTTGAGAAGGTGAAGAACTGGCAGAAGGACTCCTTCCACAAACAGATGATGGGAGGCTTCAAGGAAACCAAAGAGGCAGAGGAAGGCTTCAAGAAGGCCCAGAAACCGTGGGCCAAGAAGCTCAAGGAGCTTGAGACTGCCAAGAAGACGTACCACCTGGCTTGTAAGGAGGAGAAGGTGGCGTCGATCAGAGAGGCCAACAGCAAGGCAGACGCCTCAGTCACGGCCGACCAGCAAAAGAAGCTCCTGGACAAGGTGGACAGGTGCAAGCAGGATTCTCAGAAGGCTAAGGAGAAGTATGAGAAGACTCTGGATGAGCTGAGGAACTGTACGCCCCAGTACATGGAGAACATGGAGACAGTGTTTGACACGTGTCAGCAGTTTGAGGAGAAGAGACTGCGGTTCCTCAGGGAGGTGCTGTTGGACATCAAACGACACCTCAACCTCACCGAGAACCAAAGCTATGCCACAGTGTACAGGGACCTGGAGCACACCATCGCCTCTGCCAGCGCACAGGAGGACCTGAAATGGTTCAGCAACAACCACGGCCCTGGCATGCATATGAACTGGCCCCAGTTTGAGGAGTACAACCCAGAGATCACTCACATGATCAGCAAGCGAGAGAAGTCAAAGAAAGGAGCAGACGGTATCATGCTGACCAACGTGACAGCGGCACCGGACTATGTGGCTGCATCGGCTGGAGACAGGGGCAGtGTGAGCAGCTCTGATAAGAACCAGGCCTACTCCTCCCAGGACCAGTCGGCAGAGTGGTCAGACGATGAGCAGGCCGCGCCAAACTCCGGCTCAGACACCAATGGGGGTGGGGCCAACCCCTTTGAGGAGGAGTCAGCGAAGGGTGTGCGGGTGAGGGCGCTGTATGACTATGACGGGCAGGAACAGGACGAACTCACCTTTAAAGCAGGAGACGAGCTGACTAAACTAGAAGACGAGGATGAGCAGGGTTGGTGTAAAGGCCGGTTGGACAGTGGCCAGCTGGGCTTGTATCCTGCTAATTACGTGGAGCCCGTCTAG

Function

NR:

description
protein kinase C and casein kinase substrate in neurons protein 1-like isoform X1

GO: NA

KEGG:

id description
K20123 PACSIN; protein kinase C and casein kinase substrate in neurons protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609197.2 False 1723 mRNA 0.55 10 39315167 39351520
XM_021609198.2 False 1692 mRNA 0.55 11 39315258 39351519
XM_036983222.1 False 1568 mRNA 0.55 10 39315288 39339001
XM_036983224.1 False 1634 mRNA 0.55 10 39315288 39355720
XM_036983223.1 False 1437 mRNA 0.56 10 39315288 39355771
XM_036983221.1 True 1560 mRNA 0.55 10 39315288 39369527

Neighbor

gene id symbol gene type direction distance location
LOC110527728 NA coding downstream 87394 39211234 ~ 39227773 (-)
LOC110527726 LOC106566095 coding downstream 133918 39179704 ~ 39181249 (-)
LOC110527724 LOC106582698 coding downstream 151533 39131441 ~ 39163634 (-)
LOC110527723 LOC106582696 coding downstream 191589 39063005 ~ 39123578 (-)
LOC110527722 LOC106582694 coding downstream 259955 38933801 ~ 39055212 (-)
LOC110527733 LOC106582705 coding upstream 7581 39377108 ~ 39401955 (-)
LOC110527738 LOC106582708 coding upstream 657680 40027207 ~ 40101150 (-)
LOC110527740 LOC100194559 coding upstream 746060 40115587 ~ 40134473 (-)
LOC110527741 LOC106582711 coding upstream 765771 40135298 ~ 40275270 (-)
pkp1b LOC106582715 coding upstream 954979 40324506 ~ 40346140 (-)
G605680 NA non-coding downstream 45022 39265674 ~ 39270145 (-)
G605555 NA non-coding downstream 70221 39195613 ~ 39244946 (-)
G605575 NA non-coding downstream 186106 39085829 ~ 39129061 (-)
G605750 NA non-coding upstream 36984 39406511 ~ 39406727 (-)
G605761 NA non-coding upstream 52693 39422220 ~ 39422509 (-)
G605767 NA non-coding upstream 60411 39429938 ~ 39430378 (-)
G605792 NA non-coding upstream 85290 39454817 ~ 39455154 (-)
G605798 NA non-coding upstream 94593 39464120 ~ 39464364 (-)
G604484 NA other downstream 675767 38584293 ~ 38639400 (-)
G604485 NA other downstream 717648 38589155 ~ 38597519 (-)
G601245 NA other downstream 3553897 35760699 ~ 35761270 (-)
G600881 NA other downstream 4259939 35001880 ~ 35055228 (-)
G606135 NA other upstream 469364 39838891 ~ 39841331 (-)
G606973 NA other upstream 1259722 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 1787143 41156665 ~ 41348915 (-)
G607932 NA other upstream 1791621 41161148 ~ 41163397 (-)

Expression


Co-expression Network