LOC110527736 (LOC106582707)


Basic Information

Item Value
gene id LOC110527736
gene name LOC106582707
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39433189 ~ 39773724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609206.2
GTCGAATCTACGTAGCCTAAATCAAAAAGAATATCAGCACCATTAAGTGCATGGCGCACTCTTTCTTGGCATGTGGTGTAACTGGTGTGCGATTGTTAAATATTTGTGATTTTTATCCCGTTCTCAGCAGCGGCATTGAAACAGAATTGATAACAATGGTTTTACCACAATAATATGTGCATTTTGCTGTTTAGCATTATGATCAAATTAATTCAGTGGGCGCTGAGTGCACTCCATCGATTCGAGGGTGCTGTCTCCATTCCGCGGGCGTGCAATGTTTGCTTCTCAGTCATCTTTATTATTAGGACATGTCAGTATATGTTCTTTAAAGTTAATAAGTGACTGTAGCATAACCGCTACTAAATCCGCTGGTCAATTCGATTTATCGGCAATTAGCAGCAGGCAACGAAAGTTAGGCGAGTCCAGACTTTCAGCTCCACTTTCCACTGGACAGCGCTCGAGCAGCTTTGGAATCGAGACAGCAAACGCATGGATTTCTTTGGGATATTTCAAACGATGGAAGGAGTTTTTTGGAAGTGAGGTGGAGGACATTCTTCAAGTGGCCTAATCTACACCCTATTACCAACAGGAACAACATTTTTTGTTTATTCTCACATCAACATGTTAGTGAATTGGATATGGGTCAGTTCACACATAGAAGATTCTACCAGAGAAGGATAAAGGGGAATTCACTCAGCAGCCCGGAGACCTGAGCggcctgaacccccccccccccccccctgtgaggGATCTCCATAGGCAGGGTGGTGAGTTAGTGGGCCGAGGAGCACAGTGGGCAGAGGAGTGCCCACCACGTTGGTCAGACCATGGAGTGAGGAGGAAAGAAGGAGATGCATATGTAAGAAAGGAAGAGGAGATATCCTTTGAAGAGCCATCTAAATTAATGCTCCTATTATAATTGAGTGCTTCTGAGAGCAAAGCAACATGAGAGGACGCCTGTTCTGTGCCCACTGCTTCAAGAGGTATTATTAAGATTAACCCTCTGGATATAGAGTAGACTAGTGTTCTTTGTGATCCTGATTCCGCTGGTTTCTAGAGTGTGTCTTGATTTGTGTCTGGGCTGTGGTCATGGTGTCTCAGCCCCAGGGGTGTGCTCTGCATCGGACTGGCAGGATCTGTCACAGAGGCAGCCTGATCAGGCTCTTACTCCTTCTTTACTGCTCTCTAACGGCCGCCCAAGCCGCTAAACCCAAAGTCCCGAGCGGCACACACCTCAACTCCATCCGCATCGACGGGGATATCTCCCTGGGAGGCCTGTTCCCCGTGCACTCCAGGGGCAACGAAGGCAAGGCCTGCGGGGAGCTGAAGAAGGAGAAGGGGATCCATCGTCTGGAGGCCATGCTGTTCGCCCTGGACCGTATCAACAACGACCATTCCCTGCTTCCCAATATCACGCTGGGGGCGCGCATCCTAGACACGTGTTCCCGGGATACCCACGCCCTGGAGCAGTCACTCACCTTCGTCCAGGCTCTCATCGAGAAGGATGGGACGGACGTCAAGTGTCTCGGCGGGGGGGCACCCATCATCACCAAGCCTGAGAGGGTGGTGGGAGTCATCGGAGCCTCGTCCAGCTCTGTGTCAATCATGGTGGCCAACATACTGCGGCTCTTCAAGaTCCCCCAGGTGAGTTATGCCTCCACGGCACCGGAGCTGAGCGACAACACACGTTACGACTTTTTCTCGCGAGTGGTGCCCCCGGACACCTACCAGGCACAGGCCATGGTGGATATCGTCAAGGCCATGCGCTGGAACTTTGTCTCCACCGTGGCGTCCGAGGGGAACTATGGAGAGAGCGGTGTGGATGCCTTCATACATAAGTCTCGAGAGGACGGAGGTGTGTGTATCTCTCAGTCGGTCAAGATTCCTCGGGAGCCAAAGCCTGGAGAGTTTGGAAAGGTCATCCGCCGACTAAGAGAAAACCCAAACGCAAGGGTGGTCATCATTTTCGCCAATGAGGATGATATTAGGCGGCTACTCCAAGCAGCCAAGAAGGCCAACCAGACTGGCCATTTCATCTGGGTGGGCTCAGACAGCTGGGGCTCAAAGATATCTCCAGTGTTACACCAAGAGGAGATGGCAGAGGGAGCTGTCACCATCCTGCCCAAACGCCAGTCCATCAGAGGGTTTGATCGTTACTTCATCAGCCGCACACTGGAGAACAACAGGAGAAATATCTGGTTTGCTGAGTTCTGGGAGAACAACTTCGCCTGCAAGCTGAGCCGACACGCTTTGAAGAAAGGTTCCGGGCTGAAGAAATGCACAAATCAGGAGCGGATAGGGAAGGACTCCAACTACGAACAAGAGGGGAAGGTGCAGTTTGTGATCGATGCAGTCTATTCCATGGCCCACGCGCTGCACAACATGCACAGGGAGCTCTGTCCAGGGAAGGTGGGCCTTTGCTCTAGGATGGATCCCATCAACGGCACTCTGCTGCTCAAACACATCCGGATGCTTAACTTTGCAGGTATTGCTGGCAACCCAGTGCTTTTCAATGGGAATGGAGACGCCCCTGGTCGCTATGAGatttaccagtaccagatcagaaACCAAACAGCTGAGTACAAAATCATCGGGCACTGGACCGACCAGCTCTATCTGAATATCCGAGCAATGCACTGGCCAGGTGGAGGTCGTCAGATCCCTTACTCCATCTGCAGCCACCCCTGCCAGGCCGGAGAGCGCAAGAAAATAGTGAAGGGCATCCCTTGCTGCTGGCACTGCGAGCGCTGCGACGGCTACCAGTACCAGGCAGACACCTACAGCTGCAAGATGTGCCGCTTTGACCTGCGTCCCAACGAGAACCACACGGCCTGCCGTCCCATCCCCATTGTCAAGCTGGAATGGAGTTCCCCCTGGGCCGTCATACCTGTCCTCATCTCCGTGGTGGGCATCATGGCCACTCTGTTTGTGGTGGTCACCTTTATCCGCTACAATGACACGCCCATCGTCAAGGCGTCAGGCCGTGAGCTCAGCTACGTTCTACTGACGGGTATCTTCATGTGCTACGCCACCACTTTTCTCATGATATCTGCCCCTGACGTGGGCATCTGCTCCCTCAGACGGATCTTCCTGGGTCTGGGGATGAGTATCAGCTACGCAGCCCTGCTCACCAAGACTAACCGCATCTACCGCATCTTCGAGCAGGGATCCATGTCGGTGAGCGCCCCCAGGTTCATATCCCCAGCCTCCCAGCTGGTCATCACCTTCAGCCTGACTTCGGTGCAGCTACTGGGGGTGTGTATCTGGTTTGGCGTGGACCCGTCTCAGGCCATCATCGACTACGAGGACCAGCGCATGGCCAATCCGGACATGGCCCGTGGCGTGCTCAAATGTGACATCTCTGACCTTTCTCTGATTTGCCTGCTCGGCTACAGCATGCTGCTAATGGTCACCTGCACAGTGTACGCCATCAAGACTCGAGGCGTGCCGGAGGCCTTCAACGAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGTATCATCTGGCTGGCCTTCATCCCCATCTTCTTTGGTACCTCCCAGTCCACAGAGAAGATGTACATCCAGACAACCACGCTGACCATCTCTGTGAGCCTGAGTGCATCTGTCTCTCTGGGGATGCTGTACATGCCCAAGGTCTACGTGATCCTCAGGCACCCGGAGCAGAACGTTCCCAAACGCACACGCAGCCTCAAGGCTGTGGTCACAGCTGCCACCATGTCCAACAAGTTCAACCCCAAGGCGAGCCTACGTCCCAACGGAGAAGCCAAGTCTGAGTTGTGTGAGAGCCTTGAAACACAAGcTTTCACCACAAAACAAACATACATCAGCTACAGCAACCATGCAATCTAGGAGAGGAAGGCCATCGTCATTGCTCAGGATGGTCACCTCGTGGAACATTTTCTTATGCAGTGGAAATTGGGGGAAAAATAGAGCAAGAAAGTGGACATGGGACATGTGAGGATCACTAAAGAATTTCATAGGGAGTAGCCATTGTTAAGGACGGAGAAAAGACAAACAGAGATGCAGGAAGGGACCCTCAGGGGACCCCAACAGAACAAATACAGTATAATTGTGATGTTCCATCTTGTGTTGGCCATGGCAGACAAGACAAACACTTCCCTCCTGGCCAGAGTCCAGAGTACAGAGAGGATTCATGCAGGATGGGGCTTCTAATCCCTTCTTGTTGTTTACATTGCTGCGTTACCTTCTCTTTCACTATGACTTCCCATCTCAAGCTGATAATTGAAAGAATCTGTTTAGGTGTGTGCAATTCGCAATGTTGTAGTCTGCCAGTGTTGTCATCAGTAAGTGACATTGCTCTCAGTGCTTCGGGAAGTTGCAGAAACACCAGTTTAAGAGTGGTCCGTCCTTAAATGTCTAGGAAGACTTTAAATCAtgtaattgttaaaatatatacttCTAAAAGTattccagttttttttttaaatactggaTGGAAAAAATTATTCCAACAATGCAGGATACTTGTACTCcatcataaaaaaaatataatgatGTTGACAACAAAGAATATGGTCATTATTGATTTTAAGCATGCCAGTTTGAacatcctgtgttgtgttgttaaaaaaataatatttagaaTGCGTTCAAACTATGTTGCAGTGTCGTTCCCATTGTTTGGGCCTGAGCCTATTGTACGTATTCTCCAAACTGGTCTAGTGATTGATCTTTGTTTATTTGTGCTAAAGTGAGGCCCCTAAAGTGAGGCCCTACAGTGAAATACCATAGCTGACCCCAATCCATTTCCACCAGCTATACTCCTGGTCACACATAGAGGTTTTCATTGATTGATATGATTTATTTAAGCACCATACACCTACCAGTGCCCAGTCCACATGGGATAACACAACACTACTAAATACAATTGTCCTTTTACTCAAGGTACAGCTAAGTTGTACAGATCTAAATCCATTAAAATGGAGGTAAAGTATGCACTGGCGAGTTGCCACACAGTATTCATTCACCCAAGATGATATCCATCACGAGACTAATTcatcacacaaaaaaaatgtcatcTCTGAGGACTGTCATGTTCTGTAAAATGCTTCAGGGATATGTTCGTATACTTTATGACTGATGCCTCAAGCTGCAGAAAATAACCTACTCAAGACAAAATGCAAAAGGATCCAGTACTCATTTCAGTCGCCTACAGCTCTCTGAATAAATACaatatatgaccaaaagtatatggacacctgatcgtcgaacatctcgttccaaaatcatggtcattaatatggggttggtcccccctttgctgctgtaacagcctatgctctt
>TU689181
ACAGCAAACGCATGGATTTCTTTGGGATATTTCAAACGATGGAAGGAGTTTTTTGGAAGTGAGGTGGAGGACATTCTTCAAGTGGCCTAATCTACACCCTATTACCAACAGGAACAACATTTTTTGTTTATTCTCACATCAACATGTTAGTGAATTGGATATGGGTCAGTTCACACATAGAAGATTCTACCAGAGAAGGATAAAGGGGTGAGTAGCCAttaaaatgggtcaactttgaaaTGCAAAGATAACGTAGATGATAGACAAAGGAATTCATACGAATTGATGTGAATGTACTTATTTATTGTACACCCACACTATGTGGTTGGATTAAATTAACTGAACACAATAATTTCGACAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609206.2 False 5310 mRNA 0.49 11 39433189 39773724
TU689181 True 362 lncRNA 0.36 1 39433667 39434028

Neighbor

gene id symbol gene type direction distance location
LOC110527735 LOC106582706 coding upstream 56333 39370730 ~ 39376856 (+)
LOC110527730 LOC106582703 coding upstream 122955 39291656 ~ 39310234 (+)
LOC110527729 LOC106582701 coding upstream 192981 39228701 ~ 39240208 (+)
LOC110527727 LOC106582699 coding upstream 231611 39191081 ~ 39201578 (+)
lhfpl5a LOC106582689 coding upstream 729145 38690340 ~ 38704044 (+)
LOC110527739 LOC106582710 coding downstream 219042 39992766 ~ 40027458 (+)
csrp1b LOC106582712 coding downstream 509829 40283553 ~ 40287403 (+)
tnni1b LOC100462680 coding downstream 518316 40292040 ~ 40296179 (+)
tnnt2b LOC106582714 coding downstream 531398 40305122 ~ 40314447 (+)
LOC110527751 NA coding downstream 665155 40438879 ~ 40457742 (+)
G605126 NA non-coding upstream 4077 39428462 ~ 39429112 (+)
G605121 NA non-coding upstream 9782 39423196 ~ 39423407 (+)
G605111 NA non-coding upstream 23856 39409129 ~ 39409333 (+)
G605110 NA non-coding upstream 25608 39407374 ~ 39407581 (+)
G605079 NA non-coding upstream 77398 39355519 ~ 39355791 (+)
G606405 NA non-coding downstream 328332 40102056 ~ 40102303 (+)
G606409 NA non-coding downstream 333914 40107638 ~ 40107868 (+)
G606411 NA non-coding downstream 334645 40108369 ~ 40108609 (+)
G606412 NA non-coding downstream 341864 40115588 ~ 40125497 (+)
G604258 NA other upstream 841895 38584474 ~ 38594822 (+)
G604207 NA other upstream 933527 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 2342433 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 2857117 36573811 ~ 36582978 (+)
G600531 NA other upstream 4461784 34971128 ~ 34971405 (+)
G606400 LOC105027254 other downstream 352810 40126534 ~ 40141972 (+)
G606452 LOC106582711 other downstream 432845 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 449451 40223027 ~ 40224171 (+)
G606469 NA other downstream 457161 40230885 ~ 40231225 (+)
G605146 NA non-coding downstream 17178 39451206 ~ 39451418 (+)
G605150 NA non-coding downstream 20383 39454411 ~ 39454626 (+)
G605152 NA non-coding downstream 21715 39455743 ~ 39455980 (+)
G605158 NA non-coding downstream 29896 39463924 ~ 39464226 (+)
G605164 NA non-coding downstream 33549 39467577 ~ 39467779 (+)

Expression


Co-expression Network