LOC110527739 (LOC106582710)


Basic Information

Item Value
gene id LOC110527739
gene name LOC106582710
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 39992766 ~ 40027458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609216.2
ACTTCCTCCACAGCGCCCTCATCTGTGGATCGCACTTCtgctactcactcactcaccctcaACTCATCGCACCATAACACAACATCACTTGAAGAGAGATCACACCGCTGTTTTTCTATCATTAGAACTCTTCAATTTGGATCACAACTCTGGTTCTGTCCCTTCACCACCATTCACATCACAGAGATTTTAACTGTGTGTCACTGGACTGTTTATGCAGTAGTCTTTTGGAATCCCATTGGTTGGACTGCTGGACTGGACCGCTGGACAGGACTGGTGGACAAGACTGCTGGACCAGACTTGAACCCCATGCAGTGTATAGTAGCCTGGGGCGATgtcatctcttctctccccccgcAACGCAAAGGATCAGCCACGCACGACCAAGTCACTCTCTGACTCGTCTCCCACTACACCCTCGCTGTCTTCCAGAGGCATCAAAcatGAAAGAGTGTCCAGACTGGACTCGTCTGGTGCTTACGACCGAGAAGCGTATGACGCTCGCAGGGAAAACAGAATGGCAGCTCGGAAAAAGGCTGAGGAAGAGGCAGGATGCACTGACTATAAGAAGATGTACGAGGAGGCCATGTCTACAAATGAGAGACTCAAGTCCCGGCTTCAGGGCAGCAAACAGGAGCTGGTGTTGGTGCAGACTCAGCTGGAGAAAGTCACACAGAGAAAGATCACAATGACTGAGAGGTCCAATGAGAGGTCCATGCTTGAGAAAGAAAAACGGGAAACACGTGTCCTTCAGAAGAAGATATCAGACATGGAAGATGAAGTGAAGATCCAGACAGAGCTGCAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCCAagtgagaggaagaggatgatccAATAATTATTTCCAATTTTTACCCCAACTACACCAtcaccaaccaccaaccaccgCTACATTCAAATCATGACAGGAATGACAGATGGGCGCCAACTTTAAATCCTTTTTTGATGCCCCTTTCACCTTTCTCCTCTGTTGATGGTTGTATTGTACACAGATAGTTCACACACAGTTAGCATATTagcatttttttaaaaatgtatttatggaTTGTTATGATGCATACTCATATCGTCACAGCACATTATACTGTACGAATGTCTACGAAGGTTTAATCTATGAACTGGTGTAACAGTTGGTATATTATGATGTTCCAAGTAACTAAATTACATTTCATGTTTATTTTTAAACTGCACCAGCTGAAAAGTCTCCTGAGCCTTGTATAAATGATTTATAATCCTTTTCGACGCTGCAATCCAATGCAATCTCTTGTATGCACTGTCACCAAATGGTCATGTGTGGTAATGCATCTTACCGCAGAGGCCTACAGTATGTATGACATGATCGACAACCAGGGTTGGTACACATTTGTAAGCACTAATAAAGCAGGTAAAGATTATATGGAGAGGTGAATTTGAAAATGTAATACAAAGACTATGTTGTTTACGAACGACGCAAGACGAGCATACTTAAAAGACCTTTATTTCCTATGATAACATATAGATACGTCTGTGGAGACATTCCATGTTTTGGTTCCCTTGAGGTTCTTAATAATATCACATTGACTGATATATTGATACAAGAGCTGGAGGATATGTAGTCTTTTTGCTGGACAACAACATGTTTGTTGGTAGGGAAATAAATCATGCAATCCACAAAAGGCACaactactgacacacacacacacatacgcacacctCTACAACGAGACAAAAAAA
>TU690359
caACTCATCGCACCATAACACAACATCACTTGAAGAGAGATCACACCGCTGTTTTTCTATCATTAGAACTCTTCAATTTGGATCACAACTCTGGTTCTGTCCCTTCACCACCATTCACATCACAGAGATTTTAACTGTGTGTCACTGGACTGTTTATGCAGTAGTCTTTTGGAATCCCATTGGTTGGACTGCTGGACTGGACCGCTGGACAGGACTGGTGGACAAGACTGCTGGACCAGACTTGAACCCCATGCAGTGTATAGTAGCCTGGGGCGATgtcatctcttctctccccccgcAACGCAAAGGATCAGCCACGCACGACCAAGTCACTCTCTGACTCGTCTCCCACTACACCCTCGCTGTCTTCCAGAGGCATCAAAATCCAGACAGAGCTGCAGAATGAGAACCAGAGACTGAAGGACGAGAACGGAGCCTTAATCCGGGTCATCAGTAAACTGTCCAagtgagaggaagaggatgatccAATAATTATTTCCAATTTTTACCCCAACTACACCAtcaccaaccaccaaccaccgCTACATTCAAATCATGACAGGAATGACAGATGGGCGCCAACTTTAAATCCTTTTTTGATGCCCCTTTCACCTTTCTCCTCTGTTGATGGTTGTATTGTACACAGATAGTTCACACACAGTTAGCATATTagcatttttttaaaaatgtatttatggaTTGTTATGATGCATACTCATATCGTCACAGCACATTATACTGTACGAATGTCTACGAAGGTTTAATCTATGAACTGGTGTAACAGTTGGTATATTATGATGTTCCAAGTAACTAAATTACATTTCATGTTTATTTTTAAACTGCACCAGCTGAAAAGTCTCCTGAGC

Function

NR:

description
protein phosphatase 1 regulatory subunit 12B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609216.2 False 1771 mRNA 0.43 7 39992766 40027458
TU690359 True 866 lncRNA 0.44 2 39992825 40026957

Neighbor

gene id symbol gene type direction distance location
LOC110527736 LOC106582707 coding upstream 219042 39433189 ~ 39773724 (+)
LOC110527735 LOC106582706 coding upstream 615910 39370730 ~ 39376856 (+)
LOC110527730 LOC106582703 coding upstream 682532 39291656 ~ 39310234 (+)
LOC110527729 LOC106582701 coding upstream 752558 39228701 ~ 39240208 (+)
LOC110527727 LOC106582699 coding upstream 791188 39191081 ~ 39201578 (+)
csrp1b LOC106582712 coding downstream 256095 40283553 ~ 40287403 (+)
tnni1b LOC100462680 coding downstream 264582 40292040 ~ 40296179 (+)
tnnt2b LOC106582714 coding downstream 277664 40305122 ~ 40314447 (+)
LOC110527751 NA coding downstream 411421 40438879 ~ 40457742 (+)
LOC110527752 LOC106582721 coding downstream 446308 40473766 ~ 40481140 (+)
G605248 NA non-coding upstream 406439 39580045 ~ 39586327 (+)
G605164 NA non-coding upstream 524987 39467577 ~ 39467779 (+)
G605158 NA non-coding upstream 528540 39463924 ~ 39464226 (+)
G605152 NA non-coding upstream 536786 39455743 ~ 39455980 (+)
G605150 NA non-coding upstream 538140 39454411 ~ 39454626 (+)
G606405 NA non-coding downstream 74598 40102056 ~ 40102303 (+)
G606409 NA non-coding downstream 80180 40107638 ~ 40107868 (+)
G606411 NA non-coding downstream 80911 40108369 ~ 40108609 (+)
G606412 NA non-coding downstream 88130 40115588 ~ 40125497 (+)
G606400 LOC105027254 non-coding downstream 100002 40126534 ~ 40141972 (+)
G604258 NA other upstream 1401472 38584474 ~ 38594822 (+)
G604207 NA other upstream 1493104 38499031 ~ 38499662 (+)
G602295 gli1 other upstream 2902010 37089624 ~ 37090756 (+)
LOC110527686 LOC106582662 other upstream 3416694 36573811 ~ 36582978 (+)
G600531 NA other upstream 5021361 34971128 ~ 34971405 (+)
G606452 LOC106582711 other downstream 179111 40206569 ~ 40206897 (+)
G606464 LOC106582711 other downstream 195717 40223027 ~ 40224171 (+)
G606469 NA other downstream 203427 40230885 ~ 40231225 (+)

Expression


Co-expression Network