csrp1b (LOC106582712)


Basic Information

Item Value
gene id csrp1b
gene name LOC106582712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40283553 ~ 40287403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609219.2
ggcttctCTGGCTCTCaatttgttttctctctctgcatctcgcAAACCCTTTTCCTTCAGCCATCTAAAGCCCtttcttttttttgtcctccTCGCTCTACATCTCTTTCACAGTCTATGTGTGTACCAAGCAGACTCCTCCCTAAGTCCCAGCTTGGTTTGTTTCTCTGAGTTCTTTTAGACTGAAGCCACTCCAGAACTCCACTGTTAGAGATCACTCTACAACCAGGGAGTTTcagccacacacactacacaagAATGCCTTTGGGAGGAGGAAATAAGTGTGGCTGCTGCCAGAAGACTGTGTACTTCGCTGAGGAAGTGCAGTGCGAGGGGAAATATTTCCACAAGTCCTGCTTTCTGTGCATGGCATGTAAGAAGAACCTGGACAGCACAACGGTGGCCTGCCATGTGGATGAAATCTACTGCAAATCCTGCTACGGCAAGAAGTATGGGCCAAAAGGCTATGGCTTTGGTGGGGGAGCAGGCACCCTGAGCATGGACACAGGGGCACATCTTGGAATCAGACCTGAAGAGCAGGCAGCCCACCGCCCCACCAACAACCCCAACGCCTCAAAGTTGGCCACTAAGTTTGGCAGCTCAGATGTGTGCCCGCGCTGCGCCAAGGCTGTGTATTCTGCCGAGAAGGTGCTCGGAGGTGGAAATTCCTGGCACAAGAGCTGCTTCCGCTGTAGCAAGTGTGGGAAGGGGCTGGAATCAACCACTGTGGCTGACAAAGATGGAGAAATCTACTGTAAAGcATGTTATGCCAAGAATTTTGGTCCAAAGGGCTTTGGGTTCGGGCAGGGGGCAGGAGCTCTGGCACATGCTCAGTAGGGCTCAGGCCTCCTCGGACTACTAAACATTTGGACTGCAAATCCCTGGATTCCCCAGTCAACCTGTGTTTAATCGTGCTATCTCATTCCAGCTACTGGCAGAGGCTCACGCTGTGCACAGTTTACTTATGTGCTTACCTTACCAGCGCCGTTAGCTGCTCATGTTTTTTCTAAGATGAGGTTAATACTCTgcatgatacatttttttgtaaccACTGAGAGAACCAAGATTTACCAGCTTGTTCATTTTGGCCTAATAAACTCCTTTTTGCAATTTGAATATA

Function

NR:

description
PREDICTED: cysteine and glycine-rich protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609219.2 True 1120 mRNA 0.49 6 40283553 40287403

Neighbor

gene id symbol gene type direction distance location
LOC110527739 LOC106582710 coding upstream 256095 39992766 ~ 40027458 (+)
LOC110527736 LOC106582707 coding upstream 509829 39433189 ~ 39773724 (+)
LOC110527735 LOC106582706 coding upstream 906697 39370730 ~ 39376856 (+)
LOC110527730 LOC106582703 coding upstream 973319 39291656 ~ 39310234 (+)
LOC110527729 LOC106582701 coding upstream 1043345 39228701 ~ 39240208 (+)
tnni1b LOC100462680 coding downstream 4637 40292040 ~ 40296179 (+)
tnnt2b LOC106582714 coding downstream 17719 40305122 ~ 40314447 (+)
LOC110527751 NA coding downstream 151476 40438879 ~ 40457742 (+)
LOC110527752 LOC106582721 coding downstream 186363 40473766 ~ 40481140 (+)
LOC110527753 NA coding downstream 206250 40493653 ~ 40506453 (+)
G606502 NA non-coding upstream 1620 40281452 ~ 40281933 (+)
G606501 NA non-coding upstream 3521 40279722 ~ 40280032 (+)
G606488 NA non-coding upstream 25321 40257883 ~ 40258232 (+)
G606483 NA non-coding upstream 33488 40249864 ~ 40250065 (+)
G606471 NA non-coding upstream 50192 40233053 ~ 40233361 (+)
G606657 NA non-coding downstream 63893 40351296 ~ 40351759 (+)
G606670 NA non-coding downstream 71422 40358825 ~ 40360516 (+)
G606700 NA non-coding downstream 127337 40414740 ~ 40417069 (+)
G606705 NA non-coding downstream 142214 40429617 ~ 40429902 (+)
G606708 NA non-coding downstream 145870 40433273 ~ 40433521 (+)
G606469 NA other upstream 52328 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 59382 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 76656 40206569 ~ 40206897 (+)
G606400 LOC105027254 other upstream 149103 40126534 ~ 40141972 (+)
G604258 NA other upstream 1692259 38584474 ~ 38594822 (+)
G606977 NA other downstream 346778 40634181 ~ 40634439 (+)
G607904 NA other downstream 1175421 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 1539808 41827211 ~ 41830808 (+)
G609436 NA other downstream 2533553 42820956 ~ 42821245 (+)

Expression


Co-expression Network