tnnt2b (LOC106582714)


Basic Information

Item Value
gene id tnnt2b
gene name LOC106582714
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40305122 ~ 40314447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609225.2
TGATCCTCAACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACACGCCGAGGGGGAGCAGGAGGAAGGAGAAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA
>XM_021609226.2
TGATCCTCAACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACACGCCGAGGGGGAGCAGGAGGAAGGAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA
>XM_021609222.2
TCAACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACgagaggaggatattgTTGACGCCGAGGGGGAGCAGGAGGAAGGAGAAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA
>XM_021609224.2
TCAACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACgagaggaggatattgTTGACGCCGAGGGGGAGCAGGAGGAAGGAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA
>XM_021609220.2
AACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACaaggagaggaggatattgTTGACGCCGAGGGGGAGCAGGAGGAAGGAGAAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA
>XM_021609223.2
AACAGGGTTTAAAAGCTTATGGTTCCAACAGAGACTGGTATACAATACAATCCCACATTGTCCCCCCCATCTCAAGCCCACACTGCACCACTCTGGGTAAATTCTAAAGATGTCAGACACAGAAGAGGTTGAATATGAGGAGAAAGAACaaggagaggaggatattgTTGACGCCGAGGGGGAGCAGGAGGAAGGAGGTTGGGCAAAACCTAAACCAAAACCAGCCTTCATGCCTCAGACCAGTATGGTGCCTCCCAAAATCCCAGATGGCGAGAAAGTGGACTTTGATGATATCCACCGCAAGCGTATGGAGAAGGACCTGACTGAGCTGCAGACGCTTATCGAGGCCCATTTTGAGAGTCGCaagaaggaagaagaggagctCATTAACCTCACTGATCGTATTGAGAAGCGCAGGTCTGAGAGAGCAGAGCAAGTGAGGATCCGAACGGAGAAAGAAAAGGAGCGTCAGAACAGAATAAACGAGGAAAAGGcaagaaaggaggaagaggaatttAAGAAGAAAGCAGAGGATGACGCCAAGAAAAAAAAGGTCCTCACCAACTTGCAGTTCAGCGGGTACAAGACAGAAAAGAAAGGTGGGCCGAAAAAGAAAACAGAGCGAGAGAAGAAGAGAGCGATCTTAAGTGAACGGCATAAGGAGCTGAATATTGACCATCTCAAAGAGGACAAACTTAGAGAGAAGGCTACTGAACTGTGGAAGTGGATACATCAACTTGAGGCAGAGAAATTTGATCTCCAGTACAAACACTCCCGACAGAAATATGATGTCACCGTACTCAGGAATCGAGTCAGCGATCATCAGAAAGTTACCAAGGGGACCAGGAGCAAACGGGGCTTGAGGAAATAATGTTGCAGATCAGAATTGAGACCATAGGAGTCCATTCCATTCATACCACTTTGCCCGATGGACATCCTGGTACTCTACAGACAAGGAAGACTTGTGTGACATGTGGAATATTTTTCAGAAAAAATATTTGGAATTAACTTATGTGGATTGTTATTTTTAGGGAAAAATGTATCATAATAAACCAACAAAAATATGTTTGAAA

Function

NR:

description
troponin T, cardiac muscle isoforms-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609225.2 False 1063 mRNA 0.44 13 40305122 40314447
XM_021609226.2 False 1060 mRNA 0.44 13 40305122 40314447
XM_021609222.2 False 1075 mRNA 0.44 14 40305128 40314447
XM_021609224.2 False 1072 mRNA 0.44 14 40305128 40314447
XM_021609220.2 False 1076 mRNA 0.44 14 40305130 40314447
XM_021609223.2 True 1073 mRNA 0.44 14 40305130 40314447

Neighbor

gene id symbol gene type direction distance location
tnni1b LOC100462680 coding upstream 8943 40292040 ~ 40296179 (+)
csrp1b LOC106582712 coding upstream 17719 40283553 ~ 40287403 (+)
LOC110527739 LOC106582710 coding upstream 277664 39992766 ~ 40027458 (+)
LOC110527736 LOC106582707 coding upstream 531398 39433189 ~ 39773724 (+)
LOC110527735 LOC106582706 coding upstream 928266 39370730 ~ 39376856 (+)
LOC110527751 NA coding downstream 124432 40438879 ~ 40457742 (+)
LOC110527752 LOC106582721 coding downstream 159319 40473766 ~ 40481140 (+)
LOC110527753 NA coding downstream 179206 40493653 ~ 40506453 (+)
ngfb LOC106582728 coding downstream 368559 40683006 ~ 40707849 (+)
tspan2a LOC106582727 coding downstream 401480 40715927 ~ 40733584 (+)
G606502 NA non-coding upstream 23189 40281452 ~ 40281933 (+)
G606501 NA non-coding upstream 25090 40279722 ~ 40280032 (+)
G606488 NA non-coding upstream 46890 40257883 ~ 40258232 (+)
G606483 NA non-coding upstream 55057 40249864 ~ 40250065 (+)
G606471 NA non-coding upstream 71761 40233053 ~ 40233361 (+)
G606657 NA non-coding downstream 36849 40351296 ~ 40351759 (+)
G606670 NA non-coding downstream 44378 40358825 ~ 40360516 (+)
G606700 NA non-coding downstream 100293 40414740 ~ 40417069 (+)
G606705 NA non-coding downstream 115170 40429617 ~ 40429902 (+)
G606708 NA non-coding downstream 118826 40433273 ~ 40433521 (+)
G606469 NA other upstream 73897 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 80951 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 98225 40206569 ~ 40206897 (+)
G606400 LOC105027254 other upstream 170672 40126534 ~ 40141972 (+)
G604258 NA other upstream 1713828 38584474 ~ 38594822 (+)
G606977 NA other downstream 319734 40634181 ~ 40634439 (+)
G607904 NA other downstream 1148377 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 1512764 41827211 ~ 41830808 (+)
G609436 NA other downstream 2506509 42820956 ~ 42821245 (+)

Expression


Co-expression Network