LOC110527754 (LOC106582722)



Basic Information


Item Value
gene id LOC110527754
gene name LOC106582722
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40507742 ~ 40513295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021609251.2
ggagtcccgaggaccgagtttggtaaACGCTGCACTAACCTTAACCACTTAACCAATTTAAATGCAAACATCATTGGGGTGACGTCAGAGTTTGACGTCCCTAAGGATGCCGTATTGCAAGGACCTATATCTCACCAAGACAACACGTCGGAATCAACACATTTATAGGAAAGGAAACGCTAGACAGACCGTTGTAAAGTGATATCCGTCATGGAGGTTACAGAGAAGGTGGTGCCCAAAAACGCCCAGCTGCTATCTCTTGGCCACAAGGACACTTGTCGCCTCTTGGAGGTGTATGTGAAGCGCAGCATCAGTTTAAATGATGGGACATGTGAGGACCAGAGGTCACCAACAACGCCTCAGAAGTGGGTGACACTGTCAGAGAAATGCAGAAGTGTCCGCCGGCCTTCTAGTGACCCCTTGATCACCTTGGAGCCCAGCACACCTGATGAGGGCATTGCCAGTAGCACACCACCTGATGAGGAAGTTGTTATACCAAATGTGTCTCTAGTAGAGATCCCTGGACCTGCTGACATTCCTGAGATTGAGACGTCTACTGAACTGGAGAATAAGTCTAAAAAGGGCAAGAAGAAGAGCAAAAAGACCTCTTTCTGGAAAGGTTTTCTGGGGTTTTTCTCTATGAAGGGGAGTGACAAGAAAGACGAGCAGGAGTCTGGCACAGAGAAAGATGGACAGTCACAAGGAACCTTGCAGAAAAAGAAATCCATAAGGCAAAGGAGCTCCATGAGGAGACTATCTCTGAGAAAAATCAAGATTGACAGCCACAGAGGGTCTGTGAAGAGACCATTGGCTTTGGACAGGGCCAAGACCACTGACATAACTGGAGTTGAATCGGTTGAGAGTGTGGGGCCTACTGACTCGTACTATGAGAAAGTTTCAGAAGAGCTGGAGAAGATTGTGCACGAGGTGAAAGAGACAGAGGCAGCTCTTACAGATGAGGATGTCATAAAAAGGATCATTGTTCTGATGAAGCAGCAAGGAGACCTCATTGATAACAAGCTGAAGGAGAACCCCAGCTTGAGCTCATTCTTCCAGAAGCTGTCCTACAGCACCTTCCAGCAGTTAGCTGATACGTACGTGGAGACAGAGACACCTACAGGCCAGAGCCACCAGACACCACACACTGCTGGATCTGGGCCCGTCAATGCCCCGGAGCTGGTCAAGCTGGCCTTCACTCTGGACTTCACAGCCAGGGTGGCCTGTCTCTCCAGGCATTCCAAAGGCCACATCATGGGCCTGGGCCACCGCTACTTAGAAGACCGCTTCACTCAGACACAGGTTAATCCAGATCAGACGTTGCATAACTATGACGATCATAATCATTGATACAACGTCACATGCAAAAAAAGACTGCAGGGGAAACGGAACATTCTTCGTGGTGTAAAAGCACACGGCGTGCTCCTTGATTCCTTGTGACACAAATGGAATAGATTACTTAAAGATGACTGAAAATGAAACCCAGAGGCAAGTCATGAAGGGAACATCACACACAACACGTATAGTATGCCTTGTACCTGTAAATCTACACTAGGGCAATCTGTGTAATTACTATGTTTACAGGTTAGTAAGTAATGGAAATGCAATATGGAGTTCTTACCACATTTGGTACACTCTGTATTTATTTACCTaaattataaaatataatatatgccatttagcaggcgcttttatccagagcaactaatcatgtgtgcatacattttacgggaattgaacccactatgCTGGCATTGCAgacgccatgctctaccaacctaCTCTACAACGGACCACTAGGGATAGTAAGTACTATGTACTGTAACTGCATTCACTAACTACCCTGGTACAAGGTTATTACATTCTTAATCCTGGTTCTGGGACACAAAGGTGTGCATATTTTAGTTTTTGCCCTAGCtctacacacctgattccactaatcaAAGGTTTGATGATGAGTAATctaggtgtgttagctggggctgggacaaagctgacaccaatcaggccctcgaggactgagATTGCCTACCCCTGTAGGGTAATGCCTTGTTTCTGGAAATTATACTGAGGACCCCTGTACCTTTCACCTGAAAGAATAAGAAAATCAAGCTAATGAACAGAACTTTATGTAGCAATATTTCTAGGAAGTATAATATtaaccaaaaatataaatgcaacatgcaacaatttcaacagttttacttagttcatataaggaaatccgcATACTTGTATTTACACTTTTTTAATTGAGTACACTCTTTAGTTTTATCATAGTTTTTTCAGTCAAAGGATGAACTACTAATGAAAAATGTGCAattttatactgtatgtgtcaaCTAAAAAAAGACTAAACAGAAGACTTGAGCATCCCGAATAATAATGGGATATTGGTGTGCATTTAAATGTGGTCATTGTGATGCACCGAGGTCACAAACTCCATTTTAGACGAGACTGATTTTATGACCAAAATTACCCTATTTACAcgttgtagtcaattttgacactagaataaatgtttgaCTCATATTGTTGCCACATAGGCCGTTTTCAaagggaatgtttttttttttttagggtcaGTCGCTCTTTAACAGACATTCCCTGACAAATATTTGggcacagagtttctaaacccagaggcgcaacatcgtAAAACTTCTGGGAATGCTTGCGATACAGACCAGgctggggtttgagaagtcaatgagagaagtttAAAAATCTGAAGGCATAACCCAGATTCGAGTCAATGCCtaaagtagttgaacatgttattactccaacctcatgaaagtgacaaactgacacattTTCATTTATGTCAAAAACAACAtatcgaaggagtgcctttgatttgatggCCTGCACTTGCGTATCTCGGTGTGAGATGAGCTTTATAGCGCCGATGACGTGTTTCTACGCATGAGTTTAACCAGCCGACAAGTGCgatcggggatttctattggagaagcagttttagcCTGTCCTTGATTTGGGCACACCTATTTAAAATGGCAGGTGACCTAATCAACCACATTCATTAGCTGGACCAATAGAAACATGAATTCAATTTTCTGTAAAGGTTGAGGATAagacatcctctcctcctccatgtgaGAGATGTGTGGGGAAGCCAGGGTCTCCTCAATGCTATGGCCAAACTCCAGTGGCAGCAGCCTCTGTCAGTGGTGGAGTTTAAGACCtcaaacaatcaatcaaatgtatttattaagccatgtttacatcagcagatggcacaaagtgcttatacagaaccccagcctaaaaccctaaacagcaagca

Function


NR:

description
uncharacterized protein LOC110527754

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021609251.2 True 3307 mRNA 0.43 6 40507742 40513295

Neighbor


gene id symbol gene type direction distance location
LOC110527750 LOC106582617 coding downstream 53097 40452385 ~ 40454645 (-)
LOC110527748 tulp1 coding downstream 68688 40418035 ~ 40439054 (-)
LOC110527745 LOC106582716 coding downstream 101941 40365303 ~ 40405801 (-)
smpd2b smpd2 coding downstream 147156 40348061 ~ 40360586 (-)
pkp1b LOC106582715 coding downstream 161602 40324506 ~ 40346140 (-)
LOC110527755 LOC106582604 coding upstream 47063 40560358 ~ 40562952 (-)
LOC110527756 LOC106582724 coding upstream 72613 40585908 ~ 40596388 (-)
LOC110527758 LOC105008416 coding upstream 90156 40603451 ~ 40612049 (-)
slc25a55a LOC106582726 coding upstream 220597 40733892 ~ 40749263 (-)
tshba tshb coding upstream 240954 40754249 ~ 40756219 (-)
G606877 NA non-coding downstream 1277 40493877 ~ 40506465 (-)
G606875 NA non-coding downstream 15864 40491638 ~ 40491878 (-)
G606854 NA non-coding downstream 39287 40468171 ~ 40468455 (-)
G606853 NA non-coding downstream 39693 40467798 ~ 40468049 (-)
G606845 NA non-coding downstream 50049 40457032 ~ 40457693 (-)
G606885 NA non-coding upstream 745 40514040 ~ 40514256 (-)
G606890 NA non-coding upstream 3185 40516480 ~ 40516915 (-)
G606891 NA non-coding upstream 3957 40517252 ~ 40517621 (-)
G606894 NA non-coding upstream 6406 40519701 ~ 40520774 (-)
G606916 NA non-coding upstream 37795 40551090 ~ 40551371 (-)
LOC110527741 LOC106582711 other downstream 283575 40135298 ~ 40275270 (-)
G606135 NA other downstream 666411 39838891 ~ 39841331 (-)
LOC110527723 LOC106582696 other downstream 1438914 39063005 ~ 39123578 (-)
G604484 NA other downstream 1868342 38584293 ~ 38639400 (-)
G604485 NA other downstream 1910223 38589155 ~ 38597519 (-)
G606973 NA other upstream 115954 40629249 ~ 40629880 (-)
LOC110527764 LOC106582736 other upstream 643375 41156665 ~ 41348915 (-)
G607932 NA other upstream 647853 41161148 ~ 41163397 (-)
G608888 LOC106582750 other upstream 1431276 41944571 ~ 41951244 (-)
G608900 NA other upstream 1455274 41968569 ~ 42025704 (-)

Expression



Co-expression Network