tspan2a (LOC106582727)


Basic Information

Item Value
gene id tspan2a
gene name LOC106582727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 40715927 ~ 40733584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609256.2
TGGGCGGTTCAACAACGCGCGTAAAGCTTCTCCAATGTTGTCATTTTGAGATTGCAGCGCGGTTGTAGACTATTGTTGATGTCAAAGACGCATGTAGAACAAAGTATCGCTGTCTTTTCATTATTTTATTGGTCGTATTAGAGACGGATTTACAGAATCTTTGGAATCATGAGTAAAGTGCAAGGTGGGATGAAATGCGTGAAATATCTTCTTTTTGTTTTCAACTTCATATTCTGGCTGTGTGGCTCGTTGGTgttggcagtggggttatggttgATGTTTGACCCAAAGACAGACCAGCTCCTGAATGAAGAGGGAGCCCCCGAGACCTTCTTCATAGccgtGTACATCCTGATTGGTGCAGGCGGGGTCATGATGCTGGTGGGATTCTTTGGTTGCTGTGGAGCTGTGAAGGAGTCACAGTGTCTCCTTGCGTCGTTCTTTGCCTGCCTTCTTGTAATCTTTGGTGCAGAGGTTTCCGCAGGTGTGTTTGGATTCATGAGCAAAGACCAGATCATCGAAGACGTTCAACAATTCTATAGTGAATCTATTTCAGAGAATTCTGAAAATTCCAACGGCACTGCTGTAGCTGAAATGTACCACAATGTTCTGAATTGCTGCGGTGTCTCCATGCCTTCTTCTTTGTGTCCTGATGCTGATGAAGACACAAAGGACTGTCTGAATGCAATAATGGTATTTTTCAATGAAAAGCTCTACATTATCGGATATGTGGGGATTGGTGTAGCAGGAGTAATGGTCATTGGTATGATCTTCAGTATGGTCCTCTGCTGTGCAATTCGGAACAACAGGGAGGTGATATAGACTGACCCCGTATCTCTACCCCTCCCACCCTGCAGACCCACCAGCCCTTTTGTAATCGCCATGCCTGAATGAGGAGGTGACATCACATCTGGGCTGGATGACAAGGGGCGCCTTTtttgaatcttttttttttttaacacaaacCATACAAGTCCATGGGGTCAATTTGGTGGTGTGGGTGTGATATCACACCCGACATATCACCAGGATTTCCCCATCCCCTAGACAGTGGCCAGCACTGTGTGGAGCCAATGGGACCAggccatctctctttcctctggcATCTCTGTAAACTAAATATCTGGTCCCTCTCTGCGCTTCTCTCCAAGCGCAACATGGCTCAGGATTTGGCAGTACACTGAGACACTCCCCATTTTTCCCCTCTAACACTGCTAGCATTCCATGTACGTGTAATGTCTTCCTTTTTTGACGAAAGAAATGTGATTGGCGGAGGAGCATTGCTGTAAATACAGACTCCCCTTTTTTGTgtgtgcttttaaaaaaaaacgtattgaTCCAATGTCTTTGGTAACCTCAGCTTAAaagggcaatcagcagttgaaacaaagTGTGTTACCAACCcattttggtaaaaagctgagggatggggctgtaaccactctcaaatgaatagacagagctatggatgcaaggactgaccattcatTATATAAAAATGAGTTTTAACCATGTCTTGAGGCCatatgtttgtttacatttacaaacattggagtaaaacaagcattTATGGGGGTTCTGGCGGGGTACAAGAGTTGAACTAAACCCATGAGGCGTTAATACGGCATATTCTTCAAGTATCAATGCGTACATATTAACTTAAGTCCAAGAATGGATGTAGCAAATGCAGGTTTCCCATTTTAAGGGTTAATTGTGTGTACAGGGCTACTGTAGTCACCCATCATCTGCTTGTATGTCGGTCAGTAACAACTCCAGTCTTGGTAGTTTTACATAACTGTTGTTGGGACTTGCAGCATACATTTCGCATCTTTGTACAGACAAGCCCAAGTGACCAATCCTCACACAACTGCATATTTCACTTGAACAACCTGTATGGTTTTTGCCCTCACTTACCTCCATTAGCAAAGTGGTGCTCTGCTAAGAAGTATCCCCTGCATTTTTATGAGCTGGGAGTGTGGGCCTACAATCCAAAAAGAGCCTGTTTCAACTTGACTGACATTCTGAAATAACAATTGTCAGTGTTCTGGGTCGGGGAAGCAGCTACATTTTATGAAGTACTGTCATTCTGTAAAATGTCTAACCTTCTGAAGTCTAGATGATACATGTAATTTAGCATTGTCCCGAGTGATCTCTATTAGAGCATGCAATGTGTGAACTGTTAGTGAGTTAGTGTACATTGTGTGTGAATTCTTGTGGATGTTAAGATTGTGTGCGCACACCGGCTGTGTTGTAGAATCCAGTTTATGCTAATAATGCATGTCCATTTAGTAGCCGTTTAATTGCCTgtaaaataaaacagtaaatggGA

Function

NR:

description
tetraspanin-2-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17354 TSPAN2; tetraspanin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609256.2 True 2329 mRNA 0.43 8 40715927 40733584

Neighbor

gene id symbol gene type direction distance location
ngfb LOC106582728 coding upstream 8078 40683006 ~ 40707849 (+)
LOC110527753 NA coding upstream 209474 40493653 ~ 40506453 (+)
LOC110527752 LOC106582721 coding upstream 234787 40473766 ~ 40481140 (+)
LOC110527751 NA coding upstream 258185 40438879 ~ 40457742 (+)
tnnt2b LOC106582714 coding upstream 401480 40305122 ~ 40314447 (+)
LOC110527761 LOC106582730 coding downstream 34695 40768279 ~ 40778071 (+)
si:ch211-105j21.9 LOC106582731 coding downstream 45158 40778742 ~ 40783217 (+)
ppm1j LOC106582733 coding downstream 627605 41361189 ~ 41411312 (+)
rhoca rhoc coding downstream 680819 41414403 ~ 41439948 (+)
st7l LOC106582738 coding downstream 752104 41485688 ~ 41503766 (+)
G607034 NA non-coding upstream 2965 40712739 ~ 40712962 (+)
G606990 NA non-coding upstream 68820 40646869 ~ 40647107 (+)
G606984 NA non-coding upstream 77161 40638494 ~ 40638766 (+)
G606972 NA non-coding upstream 86048 40629533 ~ 40629879 (+)
G606971 NA non-coding upstream 87423 40628233 ~ 40628504 (+)
G607025 NA non-coding downstream 52646 40786230 ~ 40787999 (+)
G607093 LOC106582732 non-coding downstream 67502 40801086 ~ 40804767 (+)
G607106 NA non-coding downstream 90855 40824439 ~ 40824648 (+)
G607107 NA non-coding downstream 91367 40824951 ~ 40825157 (+)
G607111 NA non-coding downstream 94556 40828140 ~ 40828444 (+)
G606977 NA other upstream 81488 40634181 ~ 40634439 (+)
G606469 NA other upstream 484702 40230885 ~ 40231225 (+)
G606464 LOC106582711 other upstream 491756 40223027 ~ 40224171 (+)
G606452 LOC106582711 other upstream 509030 40206569 ~ 40206897 (+)
G607904 NA other downstream 729240 41462824 ~ 41463169 (+)
G608390 LOC106582745 other downstream 1093627 41827211 ~ 41830808 (+)
G609436 NA other downstream 2087372 42820956 ~ 42821245 (+)
G610436 NA other downstream 2676807 43410391 ~ 43410806 (+)
G610563 LOC106582806 other downstream 2850436 43584020 ~ 43584896 (+)

Expression


Co-expression Network